Evidence map›Paper›PMID 32893424›Full record

ArticleJournal of clinical laboratory analysis2021

Validation of loop-mediated isothermal amplification to detect Helicobacter pylori and 23S rRNA mutations: A prospective, observational clinical cohort study.

Chang-Geun Park, Seohyeon Kim, Hyo-Sung Jeon, Seungwoo Han

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Antibiotic Resistance ofJournal of Korean medical science · 2024
    Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Chang-Geun ParkDepartment of Internal Medicine, Daegu Fatima Hospital, Daegu, Korea.
Seohyeon KimMmonitor Inc., Daegu, Korea.
Hyo-Sung JeonMmonitor Inc., Daegu, Korea.
Seungwoo HanDepartment of Internal Medicine, Kyungpook National University Hospital, Daegu, Korea.ORCID https://orcid.org/0000-0002-1614-7635
Daegu University · KRDaegu Fatima Hospital · KRKyungpook National University Hospital · KR

Funding

Korea Health Industry Development Institute HI15C1780
6 · The paper itself

Abstract

backgroundIdentifying point mutations in 23S rRNA closely associated with clarithromycin resistance can increase the eradication rate of Helicobacter pylori (H pylori). In this study, we verified the sensitivity, specificity, and reliability of a newly developed loop-mediated isothermal amplification (LAMP) assay kit to detect H pylori and 2143G and 2182C mutations in 23S rRNA.

methodsLAMP assay to detect H pylori and a mutant strain with 2143G and 2182C was conducted with the Isopollo

resultsThe LAMP assay had good sensitivity, as it could detect as few as 10-100 copies of H pylori and mutants with 2143G and 2182C in 23S rRNA, and good specificity, as it did not react with other bacterial species. In the development cohort with 622 participants, the LAMP assay showed good agreement with RUT for detecting H pylori (kappa value 0.923, P < .001) and had exactly the same results as sequencing analysis for 2143G and 2182C point mutations. The direct LAMP cohort including 93 patients had 97.7% (42/43) of concordance in detecting 2143G and 2182C point mutations compared to the PCR-based sequencing analysis.

conclusionThe Isopollo

Indexed as

Molecular Diagnostic TechniquesNucleic Acid Amplification TechniquesAgedAnti-Bacterial AgentsClarithromycinDNA, BacterialDrug Resistance, BacterialFemaleHelicobacter InfectionsHelicobacter pyloriHumansMaleMiddle AgedPoint MutationProspective StudiesReproducibility of ResultsAnti-Bacterial AgentsClarithromycinDNA, BacterialRNA, Ribosomal, 23SHelicobacter pyloriloop-mediated isothermal amplificationpoint mutationvalidation

Identifiers

PMID32893424
PMCPMC7843275
OpenAlexW3084223534

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.