Evidence map›Paper›PMID 32894242›Full record

ArticleJournal of Alzheimer's disease : JAD2020

Examination of the Effect of Rare Variants in TREM2, ABI3, and PLCG2 in LOAD Through Multiple Phenotypes.

Claudia Olive, Laura Ibanez, Fabiana H Geraldo Farias, Fengxian Wang, John P Budde, Joanne B Norton, Jen Gentsch, John C Morris, Zeran Li, Umber Dube and 9 more

Open access · greenAbstract read
In one paragraph

Article in Journal of Alzheimer's disease : JAD, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 33 citations in OpenAlex.

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  18. The effect ofFrontiers in immunology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 1 country.

Claudia OliveNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Laura IbanezNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Fabiana H Geraldo FariasNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Fengxian WangNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
John P BuddeNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Joanne B NortonNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Jen GentschNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
John C MorrisHope Center for Neurological Disorders, Washington University School of Medicine, St. Louis, MO, USA.
Zeran LiNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Umber DubeNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Jorge Del-AguilaNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Kristy BergmannNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Joseph BradleyNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Bruno A BenitezNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Oscar HarariNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Anne FaganDepartment of Neurology, Washington University School of Medicine, St. Louis, MO, USA.
Beau AncesDepartment of Neurology, Washington University School of Medicine, St. Louis, MO, USA.
Carlos CruchagaNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Maria Victoria FernandezNeurogenomics and Informatics Center, Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Washington University in St. Louis · USHope Center for Neurological Disorders · US

Funding

Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6M
Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD)U24AG021886 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TATIANA M. FOROUD · 2002 to 2026
$119.8M
NATIONAL ALZHEIMERS COORDINATING CENTER (NACC)U01AG016976 · NIA · UNIVERSITY OF WASHINGTON · PI KUKULL, WALTER ANTHONY · 1999 to 2020
$72.8M
Smartphone-Based "Burst" Cognitive AssessmentsP01AG003991 · NIA · WASHINGTON UNIVERSITY · PI JOHN MORRIS · 1985 to 2026
$69.5M
ARIC Neurocognitive Study (ARIC-NCS) Renewal 2023-2028U01HL096812 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI JOSEF CORESH, THOMAS H MOSLEY · 2010 to 2026
$65.7M
Alzheimer's Disease Genetics ConsortiumU01AG032984 · NIA · UNIVERSITY OF PENNSYLVANIA · PI SCHELLENBERG, GERARD DAVID · 2009 to 2024
$60.4M
WASHINGTON UNIVERSITY ALZHEIMERS DISEASE RESEARCH CENTERP50AG005681 · NIA · WASHINGTON UNIVERSITY · PI MORRIS, JOHN · 1985 to 2019
$52.1M
The natural history of AB accumulation in preclinical ADP01AG026276 · NIA · WASHINGTON UNIVERSITY · PI MORRIS, JOHN · 2005 to 2025
$49.5M
THE NIA GENETICS OF ALZHEIMER'S DISEASE DATA STORAGE SITEU24AG041689 · NIA · UNIVERSITY OF PENNSYLVANIA · PI LI-SAN WANG · 2012 to 2026
$42.3M
Whole Genome Sequencing in Ethnically Diverse Cohorts for the ADSP Follow-Up Study (FUS)U01AG057659 · NIA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MAYEUX, RICHARD P, PERICAK-VANCE, MARGARET A. · 2017 to 2021
$34.4M
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6 · The paper itself

Abstract

backgroundRare variants in PLCG2 (p.P522R), ABI3 (p.S209F), and TREM2 (p.R47H, p.R62H) have been associated with late onset Alzheimer's disease (LOAD) risk in Caucasians. After the initial report, several studies have found positive results in cohorts of different ethnic background and with different phenotype.

objectiveIn this study, we aim to evaluate the association of rare coding variants in PLCG2, ABI3, and TREM2 with LOAD risk and their effect at different time points of the disease.

methodsWe used a European American cohort to assess the association of the variants prior onset (using CSF Aβ42, tau, and pTau levels, and amyloid imaging as endophenotypes) and after onset (measured as rate of memory decline).

resultsWe confirm the association with LOAD risk of TREM2 p.R47H, p.R62H and ABI3 p.S209F variants, and the protective effect of PLCG2 p.P522R. In addition, ABI3 and TREM2 gene-sets showed significant association with LOAD risk. TREM2 p.R47H and PLCG2 p.P522R variants were also statistically associated with increase of amyloid imaging and AD progression, respectively. We did not observe any association of ABI3 p.S209F with any of the other AD endophenotypes.

conclusionThe results of this study highlight the importance of including biomarkers and alternative phenotypes to better understand the role of novel candidate genes with the disease.

Indexed as

PhenotypeAdaptor Proteins, Signal TransducingAgedAged, 80 and overAlzheimer DiseaseCohort StudiesDatabases, GeneticFemaleGenetic VariationHumansMaleMembrane GlycoproteinsPhospholipase C gammaReceptors, ImmunologicABI3 protein, humanAdaptor Proteins, Signal TransducingMembrane GlycoproteinsPhospholipase C gammaPLCG2 protein, humanReceptors, ImmunologicTREM2 protein, humanABI3endophenotypeslate onset Alzheimer’s diseasePLCG2progressionTREM2

Identifiers

PMID32894242
PMCPMC7927150
OpenAlexW3082995946

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.