Evidence map›Paper›PMID 32915352›Full record

ArticlePlant molecular biology2020

Phylogenetic analysis of plant multi-domain SEC14-like phosphatidylinositol transfer proteins and structure-function properties of PATELLIN2.

Karolin Montag, Jannik Hornbergs, Rumen Ivanov, Petra Bauer

Abstract read
In one paragraph

Article in Plant molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Karolin Montag *Institute of Botany, Heinrich Heine University, 40225, Düsseldorf, Germany.
Jannik Hornbergs *Institute of Botany, Heinrich Heine University, 40225, Düsseldorf, Germany.
Rumen IvanovInstitute of Botany, Heinrich Heine University, 40225, Düsseldorf, Germany. rumen.ivanov@uni-duesseldorf.de.
Petra BauerInstitute of Botany, Heinrich Heine University, 40225, Düsseldorf, Germany. petra.bauer@hhu.de.ORCID http://orcid.org/0000-0002-0404-4532

Funding

Deutsche Forschungsgemeinschaft 267205415 - SFB 1208 (CRC 1208) Project B05
6 · The paper itself

Abstract

key messageSEC14L-PITPs guide membrane recognition and signaling. An increasingly complex modular structure of SEC14L-PITPs evolved in land plants compared to green algae. SEC14/CRAL-TRIO and GOLD domains govern membrane binding specificity. SEC14-like phosphatidylinositol transfer proteins (SEC14L-PITPs) provide cues for membrane identity by exchanging lipophilic substrates, ultimately governing membrane signaling. Flowering plant SEC14L-PITPs often have modular structure and are associated with cell division, development, and stress responses. Yet, structure-function relationships for biochemical-cellular interactions of SEC14L-PITPs are rather enigmatic. Here, we evaluate the phylogenetic relationships of the SEC14L-PITP superfamily in the green lineage. Compared to green algae, land plants have an extended set of SEC14L-PITPs with increasingly complex modular structure. SEC14-GOLD PITPs, present in land plants but not Chara, diverged to three functional subgroups, represented by the six PATELLIN (PATL) proteins in Arabidopsis. Based on the example of Arabidopsis PATL2, we dissect the functional domains for in vitro binding to phosphoinositides and liposomes and for plant cell membrane association. While the SEC14 domain and its CRAL-TRIO-N-terminal extension serve general membrane attachment of the protein, the C-terminal GOLD domain directs it to the plasma membrane by recognizing specific phosphoinositides. We discuss that the different domains of SEC14L-PITPs integrate developmental and environmental signals to control SEC14L-PITP-mediated membrane identity, important to initiate dynamic membrane events.

Indexed as

Arabidopsis ProteinsBiological EvolutionCell MembraneGene Expression ProfilingPhosphatidylinositolsPhospholipid Transfer ProteinsPhylogenyProtein DomainsStructure-Activity RelationshipArabidopsis ProteinsPhosphatidylinositolsPhospholipid Transfer ProteinsGOLD domainLiposomeMembranePATELLINPhosphatidylinositidesSEC14

Identifiers

PMID32915352
PMCPMC7674337

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.