Evidence map›Paper›PMID 32917893›Full record

ArticleNature communications2020

Concerted localization-resets precede YAP-dependent transcription.

J Matthew Franklin, Rajarshi P Ghosh, Quanming Shi, Michael P Reddick, Jan T Liphardt

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 86 citations in OpenAlex.

  1. Article
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  6. Frontiers in cell and developmental biology · 2026
    Review
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  11. Review
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  15. Article
  16. Targeting Neuraminidase 4 Attenuates Kidney Fibrosis in Mice.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

J Matthew Franklin *Bioengineering, Stanford University, Stanford, CA, 94305, USA.
Rajarshi P Ghosh *Bioengineering, Stanford University, Stanford, CA, 94305, USA. ghosh.rpg@gmail.com.ORCID http://orcid.org/0000-0003-2348-6333
Quanming ShiBioengineering, Stanford University, Stanford, CA, 94305, USA.
Michael P ReddickBioengineering, Stanford University, Stanford, CA, 94305, USA.
Jan T LiphardtBioengineering, Stanford University, Stanford, CA, 94305, USA. jan.liphardt@stanford.edu.ORCID http://orcid.org/0000-0003-2835-5025
Cancer Prevention Institute of California · USCardiovascular Institute of the South · US

Funding

TRANS-NETWORK PROJECTSU54CA143836 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI LIPHARDT, JAN T. · 2009 to 2014
$15.1M
Plasmon RulersR01GM077856 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI LIPHARDT, JAN T. · 2008 to 2012
$1.6M
Deep Super-localization Microscopy and Effectively Unbleachable Labeling for 4D NucleomicsU01EB021237 · NIBIB · STANFORD UNIVERSITY · PI LIPHARDT, JAN T. · 2015 to 2017
$1.1M
NCI NIH HHS U54 CA143836NIBIB NIH HHS U01 EB021237NIGMS NIH HHS R01 GM077856
6 · The paper itself

Abstract

Yes-associated protein 1 (YAP) is a transcriptional regulator with critical roles in mechanotransduction, organ size control, and regeneration. Here, using advanced tools for real-time visualization of native YAP and target gene transcription dynamics, we show that a cycle of fast exodus of nuclear YAP to the cytoplasm followed by fast reentry to the nucleus ("localization-resets") activates YAP target genes. These "resets" are induced by calcium signaling, modulation of actomyosin contractility, or mitosis. Using nascent-transcription reporter knock-ins of YAP target genes, we show a strict association between these resets and downstream transcription. Oncogenically-transformed cell lines lack localization-resets and instead show dramatically elevated rates of nucleocytoplasmic shuttling of YAP, suggesting an escape from compartmentalization-based control. The single-cell localization and transcription traces suggest that YAP activity is not a simple linear function of nuclear enrichment and point to a model of transcriptional activation based on nucleocytoplasmic exchange properties of YAP.

Indexed as

Adaptor Proteins, Signal TransducingCalciumCell Line, TumorCell NucleusCRISPR-Cas SystemsCytoplasmGene Expression RegulationGene Knock-In TechniquesHEK293 CellsHumansMechanotransduction, CellularOncogenesTranscription FactorsYAP-Signaling ProteinsAdaptor Proteins, Signal TransducingCalciumTranscription FactorsYAP1 protein, humanYAP-Signaling Proteins

Identifiers

PMID32917893
PMCPMC7486942
OpenAlexW3085672394

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.