Evidence map›Paper›PMID 32966557›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2020

Comparative genomic analyses illuminate the distinct evolution of megabats within Chiroptera.

Masato Nikaido, Shinji Kondo, Zicong Zhang, Jiaqi Wu, Hidenori Nishihara, Yoshihito Niimura, Shunta Suzuki, Kazushige Touhara, Yutaka Suzuki, Hideki Noguchi and 6 more

Open access · goldAbstract read
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  9. Antiviral effects of interferon-stimulated genes in bats.Frontiers in cellular and infection microbiology · 2023
    Review
  10. How significant are bats as potential carriers of zoonoticCurrent research in parasitology & vector-borne diseases · 2023
    Review
  11. Genome assembly of the Pendlebury's roundleaf bat, Hipposideros pendleburyi, revealed the expansion of Tc1/Mariner DNA transposons in Rhinolophoidea.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Masato NikaidoSchool of Life Science and Technology, Tokyo Institute of Technology, Meguro-ku, Tokyo 152-8550, Japan.
Shinji KondoAdvanced Genomics Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Zicong ZhangDepartment of Computational Intelligence and Systems Science, Tokyo Institute of Technology, Yokohama, Kanagawa 226-8502, Japan.
Jiaqi WuSchool of Life Science and Technology, Tokyo Institute of Technology, Meguro-ku, Tokyo 152-8550, Japan.
Hidenori NishiharaSchool of Life Science and Technology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 226-8501, Japan.
Yoshihito NiimuraDepartment of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan.
Shunta SuzukiDepartment of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan.
Kazushige TouharaDepartment of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan.
Yutaka SuzukiDepartment of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa City, Chiba 277-0882, Japan.
Hideki NoguchiAdvanced Genomics Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Yohei MinakuchiComparative Genomics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Atsushi ToyodaAdvanced Genomics Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Asao FujiyamaAdvanced Genomics Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Sumio SuganoDepartment of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa City, Chiba 277-0882, Japan.
Misako YonedaInstitute of Medical Science, The University of Tokyo, Minato-ku, Tokyo 108-8639, Japan.
Chieko KaiInstitute of Industrial Science, The University of Tokyo, Meguro-ku, Tokyo 153-8505, Japan.
National Institute of Genetics · JPThe University of Tokyo · JPTokyo Institute of Technology · JPTokyo University of Pharmacy and Life Sciences · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The revision of the sub-order Microchiroptera is one of the most intriguing outcomes in recent mammalian molecular phylogeny. The unexpected sister-taxon relationship between rhinolophoid microbats and megabats, with the exclusion of other microbats, suggests that megabats arose in a relatively short period of time from a microbat-like ancestor. In order to understand the genetic mechanism underlying adaptive evolution in megabats, we determined the whole-genome sequences of two rousette megabats, Leschenault's rousette (Rousettus leschenaultia) and the Egyptian fruit bat (R. aegyptiacus). The sequences were compared with those of 22 other mammals, including nine bats, available in the database. We identified that megabat genomes are distinct in that they have extremely low activity of SINE retrotranspositions, expansion of two chemosensory gene families, including the trace amine receptor (TAAR) and olfactory receptor (OR), and elevation of the dN/dS ratio in genes for immunity and protein catabolism. The adaptive signatures discovered in the genomes of megabats may provide crucial insight into their distinct evolution, including key processes such as virus resistance, loss of echolocation, and frugivorous feeding.

Indexed as

Evolution, MolecularPhylogenyAnimalsChiropteraGenomicsImmune SystemSequence Analysis, DNAadaptive evolutionchemosensory receptor genesmegabatSINEswhole genome

Identifiers

PMID32966557
PMCPMC7547651
OpenAlexW3088501552

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.