Evidence map›Paper›PMID 33004440›Full record

ReviewThe Journal of biological chemistry2020

Building better polymerases: Engineering the replication of expanded genetic alphabets.

Zahra Ouaray, Steven A Benner, Millie M Georgiadis, Nigel G J Richards

Open access · hybridAbstract readReview
In one paragraph

Review in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
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  8. Review
  9. Article
  10. Article
  11. Loop-Mediated Isothermal Amplification: From Theory to Practice.Russian journal of bioorganic chemistry · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Zahra OuaraySchool of Chemistry, Cardiff University, Park Place, Cardiff, United Kingdom.
Steven A BennerFoundation for Applied Molecular Evolution, Alachua, Florida, USA.
Millie M GeorgiadisDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana, USA. Electronic address: mgeorgia@iu.edu.
Nigel G J RichardsSchool of Chemistry, Cardiff University, Park Place, Cardiff, United Kingdom; Foundation for Applied Molecular Evolution, Alachua, Florida, USA. Electronic address: RichardsN14@cardiff.ac.uk.
Foundation for Applied Molecular Evolution · USCardiff University · GBIndiana University School of Medicine

Funding

Transforming Life Sciences: Artificial LifeR01GM128186 · NIGMS · FOUNDATION FOR APPLIED MOLECULAR EVOLUTN · PI BENNER, STEVEN A · 2017 to 2021
$3.4M
Biotechnology and Biological Sciences Research Council P/018017/1NIGMS NIH HHS R01 GM128186
6 · The paper itself

Abstract

DNA polymerases are today used throughout scientific research, biotechnology, and medicine, in part for their ability to interact with unnatural forms of DNA created by synthetic biologists. Here especially, natural DNA polymerases often do not have the "performance specifications" needed for transformative technologies. This creates a need for science-guided rational (or semi-rational) engineering to identify variants that replicate unnatural base pairs (UBPs), unnatural backbones, tags, or other evolutionarily novel features of unnatural DNA. In this review, we provide a brief overview of the chemistry and properties of replicative DNA polymerases and their evolved variants, focusing on the Klenow fragment of

Indexed as

DNA ReplicationProtein EngineeringTaq PolymeraseDNADNATaq Polymerasebiotechnologycomputer modelingdirected evolutionDNA polymeraseenzyme mechanismenzyme structureexpanded genetic alphabetsmolecular dynamicsnucleoside/nucleotide analogueprotein-DNA interactionsynthetic biologyX-ray crystallography

Identifiers

PMID33004440
PMCPMC7863901
OpenAlexW3089734902

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.