Evidence map›Paper›PMID 33077594›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Polymerase δ promotes chromosomal rearrangements and imprecise double-strand break repair.

Jacob V Layer, Lydie Debaize, Alexandria Van Scoyk, Nealia C House, Alexander J Brown, Yunpeng Liu, Kristen E Stevenson, Michael Hemann, Steven A Roberts, Brendan D Price and 2 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. POLD3 as Controller of Replicative DNA Repair.International journal of molecular sciences · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Multifaceted Nature of DNA Polymerase θ.International journal of molecular sciences · 2023
    Review
  17. Critical DNA damaging pathways in tumorigenesis.Seminars in cancer biology · 2022
    Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Jacob V LayerDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215.
Lydie DebaizeDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215.ORCID 0000-0003-3718-3210
Alexandria Van ScoykDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215.
Nealia C HouseDepartment of Radiation Oncology, Dana-Farber Cancer Institute, Boston, MA 02215.ORCID 0000-0003-1264-7699
Alexander J BrownSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164.
Yunpeng LiuThe Koch Institute for Integrative Cancer Research at MIT, Massachusetts Institute of Technology, Cambridge, MA 02139.
Kristen E StevensonDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215.
Michael HemannThe Koch Institute for Integrative Cancer Research at MIT, Massachusetts Institute of Technology, Cambridge, MA 02139.
Steven A RobertsSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164.ORCID 0000-0002-3628-5808
Brendan D PriceDepartment of Radiation Oncology, Dana-Farber Cancer Institute, Boston, MA 02215.
David M WeinstockDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215; dweinstock@partners.org t.day@northeastern.edu.ORCID 0000-0002-8724-3907
Tovah A DayDepartment of Biology, Northeastern University, Boston, MA 02115 dweinstock@partners.org t.day@northeastern.edu.ORCID 0000-0003-3894-1407
Dana-Farber Cancer Institute · USMassachusetts Institute of Technology · USWashington State University · USBroad Institute · USNortheastern University · US

Funding

Training Program in Bioinformatics and Integrative GenomicsT32HG002295 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Peter J Park · 2001 to 2026
$15.8M
Targeting High-Risk Lymphoid NeoplasmsR35CA231958 · NCI · DANA-FARBER CANCER INST · PI WEINSTOCK, DAVID MARC · 2019 to 2021
$2.9M
The Role of PARP3 in Telomere RegulationK01AG056554 · NIA · NORTHEASTERN UNIVERSITY · PI DAY, TOVAH · 2018 to 2022
$617k
NCI NIH HHS R35 CA231958NHGRI NIH HHS T32 HG002295NIA NIH HHS K01 AG056554
6 · The paper itself

Abstract

Recent studies have implicated DNA polymerases θ (Pol θ) and β (Pol β) as mediators of alternative nonhomologous end-joining (Alt-NHEJ) events, including chromosomal translocations. Here we identify subunits of the replicative DNA polymerase δ (Pol δ) as promoters of Alt-NHEJ that results in more extensive intrachromosomal mutations at a single double-strand break (DSB) and more frequent translocations between two DSBs. Depletion of the Pol δ accessory subunit POLD2 destabilizes the complex, resulting in degradation of both POLD1 and POLD3 in human cells. POLD2 depletion markedly reduces the frequency of translocations with sequence modifications but does not affect the frequency of translocations with exact joins. Using separation-of-function mutants, we show that both the DNA synthesis and exonuclease activities of the POLD1 subunit contribute to translocations. As described in yeast and unlike Pol θ, Pol δ also promotes homology-directed repair. Codepletion of POLD2 with 53BP1 nearly eliminates translocations. POLD1 and POLD2 each colocalize with phosphorylated H2AX at ionizing radiation-induced DSBs but not with 53BP1. Codepletion of POLD2 with either ligase 3 (LIG3) or ligase 4 (LIG4) does not further reduce translocation frequency compared to POLD2 depletion alone. Together, these data support a model in which Pol δ promotes Alt-NHEJ in human cells at DSBs, including translocations.

Indexed as

DNA End-Joining RepairTranslocation, GeneticDNA Breaks, Double-StrandedDNA Polymerase IIIGene Knockdown TechniquesHEK293 CellsHeLa CellsHumansRNA, Small InterferingDNA Polymerase IIIPOLD1 protein, humanPOLD2 protein, humanPOLD3 protein, humanRNA, Small Interferingnonhomologous end-joiningPOLD1POLD2polymerase δtranslocation

Identifiers

PMID33077594
PMCPMC7959522
OpenAlexW3093057838

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.