Evidence map›Paper›PMID 33080218›Full record

ArticleCell2020

SARS-CoV-2 Disrupts Splicing, Translation, and Protein Trafficking to Suppress Host Defenses.

Abhik K Banerjee, Mario R Blanco, Emily A Bruce, Drew D Honson, Linlin M Chen, Amy Chow, Prashant Bhat, Noah Ollikainen, Sofia A Quinodoz, Colin Loney and 12 more

Open access · hybridAbstract read
In one paragraph

Article in Cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 389 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
389citing papers in PubMed, 1 pooled it
39.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

389 citing papers in PubMed, 1 synthesis or guideline pooled it, 623 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Ribosome biogenesis bottlenecks reveal vulnerabilities in cancer.bioRxiv : the preprint server for biology · 2026
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  12. Article
  13. SARS-CoV-2 and MERS-CoV disrupt host protein synthesis via nsp1 with differential effects on the integrated stress response.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  14. Review
  15. Ribosome Molecular Aging Shapes Translation Dynamics.bioRxiv : the preprint server for biology · 2026
    Article
  16. Impact of nutrition on long COVID.Sports medicine and health science · 2026
    Review
  17. Article
  18. Article
  19. A bacterial translation activator with an intrinsically disordered RNA-binding region.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  20. Article

329 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 2 countries.

Abhik K BanerjeeDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA; Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA.
Mario R BlancoDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Emily A BruceDepartments of Medicine, Division of Immunobiology and Microbiology, and Molecular Genetics, Larner College of Medicine, University of Vermont, Burlington, VT 05405, USA.
Drew D HonsonDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Linlin M ChenDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Amy ChowDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Prashant BhatDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA; David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Noah OllikainenDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Sofia A QuinodozDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Colin LoneyMRC-University of Glasgow Centre for Virus Research (CVR), Glasgow G61 1QH, UK.
Jasmine ThaiDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Zachary D MillerDepartment of Surgery and University of Vermont Cancer Center, University of Vermont College of Medicine, 89 Beaumont Avenue, Burlington, VT 05405, USA.
Aaron E LinBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Madaline M SchmidtDepartments of Medicine, Division of Immunobiology and Microbiology, and Molecular Genetics, Larner College of Medicine, University of Vermont, Burlington, VT 05405, USA.
Douglas G StewartMRC-University of Glasgow Centre for Virus Research (CVR), Glasgow G61 1QH, UK.
Daniel GoldfarbMRC-University of Glasgow Centre for Virus Research (CVR), Glasgow G61 1QH, UK.
Giuditta De LorenzoMRC-University of Glasgow Centre for Virus Research (CVR), Glasgow G61 1QH, UK.
Suzannah J RihnMRC-University of Glasgow Centre for Virus Research (CVR), Glasgow G61 1QH, UK.
Rebecca M VoorheesDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Jason W BottenDepartments of Medicine, Division of Immunobiology and Microbiology, and Molecular Genetics, Larner College of Medicine, University of Vermont, Burlington, VT 05405, USA.
Devdoot MajumdarDepartment of Surgery and University of Vermont Cancer Center, University of Vermont College of Medicine, 89 Beaumont Avenue, Burlington, VT 05405, USA. Electronic address: dev.Majumdar@med.uvm.edu.
Mitchell GuttmanDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA. Electronic address: mguttman@caltech.edu.
California Institute of Technology · USMRC University of Glasgow Centre for Virus Research · GBUniversity of Vermont · USBroad Institute · USUniversity of Southern California · US

Funding

Understanding Factors Influencing COVID-19 Testing and Vaccination in Immigrant Low-income and Homeless Populations and Testing Targeted InterventionsU54GM115516 · NIGMS · MAINEHEALTH · PI Kimberly Luebbers · 2017 to 2026
$51.6M
UCLA-Caltech Medical Scientist Training ProgramT32GM008042 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AJIJOLA, OLUJIMI A, DAWSON, DAVID WAYNE · 1985 to 2023
$29.9M
Analysis and Characterization of Trauma-Induced CoagulopathyUM1HL120877 · NHLBI · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI MORRISSEY, JAMES H., WISNIEWSKI, STEPHEN R · 2013 to 2019
$26.6M
Using Dengue Controlled Human Infection Model to Identify Adaptive Immune Correlates of ProtectionP20GM125498 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI Beth Diane Kirkpatrick · 2018 to 2026
$24.9M
PREDOCTORAL TRAINING IN BIOLOGY AND CHEMISTRYT32GM007616 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN · 1985 to 2019
$22.9M
Vermont Immunology/Infectious Diseases CenterP30GM118228 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI BUDD, RALPH C · 2016 to 2021
$6.8M
Mechanisms of Protection and Durability for a Live Attenuated Tetravalent Dengue VaccineU01AI141997 · NIAID · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI Sean A. Diehl, Anna Palmer Durbin · 2019 to 2026
$5.1M
Deciphering the function and mechanisms of lncRNA-mediated organization of nuclear compartmentsU01DA040612 · NIDA · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI GUTTMAN, MITCHELL, RINN, JOHN LOUIS · 2015 to 2019
$4.1M
Novel tools to comprehensively map dynamic organization of RNA and DNA in higher-order nuclear structures within single cellsU01HL130007 · NHLBI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI GUTTMAN, MITCHELL, ISMAGILOV, RUSTEM F · 2015 to 2019
$3.9M
Therapeutic antibodies for treatment of hantavirus cardiopulmonary syndromeR41AI132047 · NIAID · CELDARA MEDICAL, LLC · PI BOTTEN, JASON W., IVANOVSKA, IRENA · 2017 to 2018
$800k
Long Non-Coding RNA-mediated Differential Regulation of Notch Pathway Targets in Early T-cell DevelopmentF30HL136080 · NHLBI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI BANERJEE, ABHIK · 2017 to 2021
$241k
Determining the function and mechanism of the MALAT1 long non-coding RNA in co-transcriptional splicingF30CA247447 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI BHAT, PRASHANT · 2020 to 2021
$102k
NCI NIH HHS F30 CA247447NHLBI NIH HHS F30 HL136080NHLBI NIH HHS U01 HL130007NHLBI NIH HHS UM1 HL120877NIAID NIH HHS R41 AI132047NIAID NIH HHS U01 AI141997NIDA NIH HHS U01 DA040612NIGMS NIH HHS P20 GM125498NIGMS NIH HHS P30 GM118228NIGMS NIH HHS T32 GM007616NIGMS NIH HHS T32 GM008042NIGMS NIH HHS U54 GM115516Wellcome Trust
6 · The paper itself

Abstract

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a recently identified coronavirus that causes the respiratory disease known as coronavirus disease 2019 (COVID-19). Despite the urgent need, we still do not fully understand the molecular basis of SARS-CoV-2 pathogenesis. Here, we comprehensively define the interactions between SARS-CoV-2 proteins and human RNAs. NSP16 binds to the mRNA recognition domains of the U1 and U2 splicing RNAs and acts to suppress global mRNA splicing upon SARS-CoV-2 infection. NSP1 binds to 18S ribosomal RNA in the mRNA entry channel of the ribosome and leads to global inhibition of mRNA translation upon infection. Finally, NSP8 and NSP9 bind to the 7SL RNA in the signal recognition particle and interfere with protein trafficking to the cell membrane upon infection. Disruption of each of these essential cellular functions acts to suppress the interferon response to viral infection. Our results uncover a multipronged strategy utilized by SARS-CoV-2 to antagonize essential cellular processes to suppress host defenses.

Indexed as

Host-Pathogen InteractionsProtein BiosynthesisRNA SplicingA549 CellsAnimalsChlorocebus aethiopsCOVID-19HEK293 CellsHumansInterferonsProtein TransportRNA, MessengerRNA, Ribosomal, 18SRNA, Small CytoplasmicSARS-CoV-2Signal Recognition Particle7SL RNAInterferonsRNA, MessengerRNA, Ribosomal, 18SRNA, Small CytoplasmicSignal Recognition ParticleViral Nonstructural ProteinsinterferonmRNA splicingNSP1NSP16NSP8NSP9protein traffickingRNA-protein interactionsSARS-CoV-2translation

Identifiers

PMID33080218
PMCPMC7543886
OpenAlexW3092296275

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.