Evidence map›Paper›PMID 33109212›Full record

ArticleBMC medicine2020

Genetic architecture of cardiometabolic risks in people living with HIV.

Haoxiang Cheng, Anshuman Sewda, Carla Marquez-Luna, Sierra R White, Bridget M Whitney, Jessica Williams-Nguyen, Robin M Nance, Won Jun Lee, Mari M Kitahata, Michael S Saag and 12 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in BMC medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 2 pooled it
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 2 syntheses or guidelines pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Regulatory elements inGenetics in medicine open · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 10 institutions in 2 countries.

Haoxiang Cheng *Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY, 10029, United States of America.
Anshuman Sewda *Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY, 10029, United States of America.
Carla Marquez-LunaThe Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Sierra R WhiteDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY, 10029, United States of America.
Bridget M WhitneyDepartment of Epidemiology, University of Washington School of Public Health, Seattle, WA, United States of America.
Jessica Williams-NguyenDepartment of Epidemiology, University of Washington School of Public Health, Seattle, WA, United States of America.
Robin M NanceDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY, 10029, United States of America.
Won Jun LeeDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY, 10029, United States of America.
Mari M KitahataDepartment of Medicine, University of Washington School of Medicine, Seattle, WA, United States of America.
Michael S SaagSchool of Medicine, University of Alabama at Birmingham, Birmingham, AL, United States of America.
Amanda WilligSchool of Medicine, University of Alabama at Birmingham, Birmingham, AL, United States of America.
Joseph J EronDepartment of Medicine, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27514, United States of America.
W Christopher MathewsDepartment of Medicine, University of California San Diego, San Diego, CA, United States of America.
Peter W HuntDivision of Experimental Medicine, University of California San Francisco, San Francisco, CA, United States of America.
Richard D MooreDepartment of Medicine, Johns Hopkins University, Baltimore, MD, United States of America.
Allison WebelFrances Payne Bolton School of Nursing, Case Western Reserve University, Cleveland, OH, United States of America.
Kenneth H MayerThe Fenway Institute at Fenway Health, Boston, MA, United States of America.
Joseph A DelaneyDepartment of Epidemiology, University of Washington School of Public Health, Seattle, WA, United States of America.
Paul K CraneDepartment of Medicine, University of Washington School of Medicine, Seattle, WA, United States of America.
Heidi M CraneDepartment of Medicine, University of Washington School of Medicine, Seattle, WA, United States of America.
Ke Hao *Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY, 10029, United States of America.
Inga Peter *Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY, 10029, United States of America. inga.peter@mssm.edu.ORCID http://orcid.org/0000-0002-5638-9137
University of Washington · USIcahn School of Medicine at Mount Sinai · USUniversity of Alabama at Birmingham · USCase Western Reserve University · USFenway Health · USIIHMR University · INJohns Hopkins University · USUniversity of California San Diego · USUniversity of California, San Francisco · USUniversity of North Carolina at Chapel Hill · US

Funding

University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI CONNIE L CELUM · 1988 to 2026
$104.9M
Unsolicited R24 for the CFAR-Network of Integrated Clinical Sciences, CNICSR24AI067039 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Michael S. Saag · 2006 to 2026
$99.4M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Paul A. Goepfert · 1988 to 2026
$84.1M
University of Alabama at Birmingham's Diabetes Research CenterP30DK079626 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BARBARA A GOWER · 2013 to 2026
$19.5M
Substance use patterns and contexts: impact on epigenetic age and prevention strategies in an HIV clinical care cohortR01DA047045 · NIDA · UNIVERSITY OF WASHINGTON · PI Heidi M. Crane, Joseph Austin Delaney · 2018 to 2026
$5.1M
Links between Cardiovascular disease, Lung disease, and Obstructive sleep apnea in HIV: Understanding complex patientsR01HL126538 · NHLBI · UNIVERSITY OF WASHINGTON · PI CRANE, HEIDI M., CROTHERS, KRISTINA ANNE · 2015 to 2025
$5.1M
Pharmacogenomics and Systems Pharmacology Approaches to Toxicity, Tolerability, and Comorbidities Associated with Modern Antiretroviral TherapiesR01HG010649 · NHGRI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CRANE, HEIDI M., PETER, INGA · 2019 to 2023
$4.5M
Genomic approaches to cardiometabolic risk and treatment in HIVR01HL125027 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CRANE, HEIDI M., PETER, INGA · 2014 to 2017
$2.9M
Cardiovascular, Pulmonary and Hematological Disease in HIV: Prevention and TreatmentR56HL126538 · NHLBI · UNIVERSITY OF WASHINGTON · PI CRANE, HEIDI M., CROTHERS, KRISTINA ANNE · 2014 to 2014
$799k
NHGRI NIH HHS R01 HG010649NHLBI NIH HHS R01 HL125027NHLBI NIH HHS R01 HL126538NHLBI NIH HHS R56 HL126538NIAID NIH HHS P30 AI027757NIAID NIH HHS P30 AI027763NIAID NIH HHS P30 AI027767NIAID NIH HHS R24 AI067039NIDA NIH HHS R01 DA047045NIDDK NIH HHS P30 DK079626
6 · The paper itself

Abstract

backgroundAdvances in antiretroviral therapies have greatly improved the survival of people living with human immunodeficiency virus (HIV) infection (PLWH); yet, PLWH have a higher risk of cardiovascular disease than those without HIV. While numerous genetic loci have been linked to cardiometabolic risk in the general population, genetic predictors of the excessive risk in PLWH are largely unknown.

methodsWe screened for common and HIV-specific genetic variants associated with variation in lipid levels in 6284 PLWH (3095 European Americans [EA] and 3189 African Americans [AA]), from the Centers for AIDS Research Network of Integrated Clinical Systems cohort. Genetic hits found exclusively in the PLWH cohort were tested for association with other traits. We then assessed the predictive value of a series of polygenic risk scores (PRS) recapitulating the genetic burden for lipid levels, type 2 diabetes (T2D), and myocardial infarction (MI) in EA and AA PLWH.

resultsWe confirmed the impact of previously reported lipid-related susceptibility loci in PLWH. Furthermore, we identified PLWH-specific variants in genes involved in immune cell regulation and previously linked to HIV control, body composition, smoking, and alcohol consumption. Moreover, PLWH at the top of European-based PRS for T2D distribution demonstrated a > 2-fold increased risk of T2D compared to the remaining 95% in EA PLWH but to a much lesser degree in AA. Importantly, while PRS for MI was not predictive of MI risk in AA PLWH, multiethnic PRS significantly improved risk stratification for T2D and MI.

conclusionsOur findings suggest that genetic loci involved in the regulation of the immune system and predisposition to risky behaviors contribute to dyslipidemia in the presence of HIV infection. Moreover, we demonstrate the utility of the European-based and multiethnic PRS for stratification of PLWH at a high risk of cardiometabolic diseases who may benefit from preventive therapies.

Indexed as

Cardiometabolic Risk FactorsCohort StudiesFemaleGenome-Wide Association StudyHIV InfectionsHumansMaleMiddle AgedGenome-wide association studyHIVLipoproteinMyocardial infarctionPolygenic risk scoreTriglycerideType 2 diabetes

Identifiers

PMID33109212
PMCPMC7592520
OpenAlexW3096093482

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.