Evidence map›Paper›PMID 33115507›Full record

ArticleEpigenetics & chromatin2020

SAGA-CORE subunit Spt7 is required for correct Ubp8 localization, chromatin association and deubiquitinase activity.

Carme Nuño-Cabanes, Varinia García-Molinero, Manuel Martín-Expósito, María-Eugenia Gas, Paula Oliete-Calvo, Encar García-Oliver, María de la Iglesia-Vayá, Susana Rodríguez-Navarro

Open access · goldAbstract read
In one paragraph

Article in Epigenetics & chromatin, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Peculiarities of theInternational journal of molecular sciences · 2025
    Article
  3. Article
  4. TheFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Carme Nuño-CabanesGene Expression and RNA Metabolism Laboratory, Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Científicas (CSIC), C/Jaume Roig 11, 46010, Valencia, Spain.
Varinia García-MolineroGene Expression and RNA Metabolism Laboratory, Centro de Investigación Príncipe Felipe (CIPF), C/E. Primo Yúfera 3, 46012, Valencia, Spain.
Manuel Martín-ExpósitoGene Expression and RNA Metabolism Laboratory, Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Científicas (CSIC), C/Jaume Roig 11, 46010, Valencia, Spain.
María-Eugenia GasGene Expression and RNA Metabolism Laboratory, Centro de Investigación Príncipe Felipe (CIPF), C/E. Primo Yúfera 3, 46012, Valencia, Spain.
Paula Oliete-CalvoGene Expression and RNA Metabolism Laboratory, Centro de Investigación Príncipe Felipe (CIPF), C/E. Primo Yúfera 3, 46012, Valencia, Spain.
Encar García-OliverGene Expression and RNA Metabolism Laboratory, Centro de Investigación Príncipe Felipe (CIPF), C/E. Primo Yúfera 3, 46012, Valencia, Spain.
María de la Iglesia-VayáBrain Connectivity Lab. Joint Unit FISABIO & Centro de Investigación Príncipe Felipe (CIPF), C/E. Primo Yúfera 3, 46012, Valencia, Spain.
Susana Rodríguez-NavarroGene Expression and RNA Metabolism Laboratory, Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Científicas (CSIC), C/Jaume Roig 11, 46010, Valencia, Spain. srodriguez@ibv.csic.es.ORCID 0000-0001-7472-3111
Centro de Investigacion Principe Felipe · ESConsejo Superior de Investigaciones Científicas · ESFundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana · ES

Funding

Agencia Estatal de Investigación BFU2014-57636Agencia Estatal de Investigación BFU2015-71978Agencia Estatal de Investigación PGC2018-099872-B-I00Conselleria d'Educació, Investigació, Cultura i Esport PROM/2012/061Conselleria d'Educació, Investigació, Cultura i Esport PROMETEO 2016/093Horizon 2020 Framework Programme grant agreement 688945
6 · The paper itself

Abstract

backgroundHistone H2B deubiquitination is performed by numerous deubiquitinases in eukaryotic cells including Ubp8, the catalytic subunit of the tetrameric deubiquitination module (DUBm: Ubp8; Sus1; Sgf11; Sgf73) of the Spt-Ada-Gcn5 acetyltransferase (SAGA). Ubp8 is linked to the rest of SAGA through Sgf73 and is activated by the adaptors Sus1 and Sgf11. It is unknown if DUBm/Ubp8 might also work in a SAGA-independent manner.

resultsHere we report that a tetrameric DUBm is assembled independently of the SAGA-CORE components SPT7, ADA1 and SPT20. In the absence of SPT7, i.e., independent of the SAGA complex, Ubp8 and Sus1 are poorly recruited to SAGA-dependent genes and to chromatin. Notably, cells lacking Spt7 or Ada1, but not Spt20, show lower levels of nuclear Ubp8 than wild-type cells, suggesting a possible role for SAGA-CORE subunits in Ubp8 localization. Last, deletion of SPT7 leads to defects in Ubp8 deubiquitinase activity in in vivo and in vitro assays.

conclusionsCollectively, our studies show that the DUBm tetrameric structure can form without a complete intact SAGA-CORE complex and that it includes full-length Sgf73. However, subunits of this SAGA-CORE influence DUBm association with chromatin, its localization and its activity.

Indexed as

ChromatinEndopeptidasesHistonesProtein BindingProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrans-ActivatorsTranscription FactorsUbiquitinationChromatinEndopeptidasesHistonesSaccharomyces cerevisiae ProteinsSAGA complex, S cerevisiaeSPT7 protein, S cerevisiaeTrans-ActivatorsTranscription FactorsUBP8 protein, S cerevisiaeHistone deubiquitinationSAGASpt7TranscriptionYeast

Identifiers

PMID33115507
PMCPMC7594455
OpenAlexW3096208562

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.