Evidence map›Paper›PMID 33116295›Full record

ArticleCell death and differentiation2021

Single-cell RNA-seq reveals novel mitochondria-related musculoskeletal cell populations during adult axolotl limb regeneration process.

Tian Qin, Chun-Mei Fan, Ting-Zhang Wang, Heng Sun, Yan-Yan Zhao, Ruo-Jin Yan, Long Yang, Wei-Liang Shen, Jun-Xin Lin, Varitsara Bunpetch and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell death and differentiation, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Hyperplastic Human Macromass Cartilage for Joint Regeneration.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
  8. Emerging roles of mitochondria in animal regeneration.Cell regeneration (London, England) · 2023
    Review
  9. Now that We Got There, What Next?Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  10. The salamander blastema within the broader context of metazoan regeneration.Frontiers in cell and developmental biology · 2023
    Review
  11. Rebuilding limbs, one cell at a time.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Article
  12. Article
  13. Open biology · 2022
    Article
  14. The amazing and anomalous axolotls as scientific models.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Article
  15. Review
  16. Cell Hypertrophy: A "Biophysical Roadblock" to Reversing Kidney Injury.Frontiers in cell and developmental biology · 2022
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 8 countries.

Tian Qin *Dr. Li Dak Sum-Yip Yio Chin Center for Stem Cells and Regenerative Medicine and Department of Orthopedic Surgery of The Second Affiliated Hospital,, Zhejiang University School of Medicine, Hangzhou, China.
Chun-Mei Fan *Dr. Li Dak Sum-Yip Yio Chin Center for Stem Cells and Regenerative Medicine and Department of Orthopedic Surgery of The Second Affiliated Hospital,, Zhejiang University School of Medicine, Hangzhou, China.
Ting-Zhang Wang *Key Laboratory of Microbial Technology and Bioinformatics of Zhejiang Province, Hangzhou, China.
Heng SunKey Laboratory of Tissue Engineering and Regenerative Medicine of Zhejiang Province, Zhejiang University School of Medicine, Hangzhou, China.
Yan-Yan ZhaoDr. Li Dak Sum-Yip Yio Chin Center for Stem Cells and Regenerative Medicine and Department of Orthopedic Surgery of The Second Affiliated Hospital,, Zhejiang University School of Medicine, Hangzhou, China.
Ruo-Jin YanDr. Li Dak Sum-Yip Yio Chin Center for Stem Cells and Regenerative Medicine and Department of Orthopedic Surgery of The Second Affiliated Hospital,, Zhejiang University School of Medicine, Hangzhou, China.
Long YangKey Laboratory of Tissue Engineering and Regenerative Medicine of Zhejiang Province, Zhejiang University School of Medicine, Hangzhou, China.
Wei-Liang ShenDr. Li Dak Sum-Yip Yio Chin Center for Stem Cells and Regenerative Medicine and Department of Orthopedic Surgery of The Second Affiliated Hospital,, Zhejiang University School of Medicine, Hangzhou, China.
Jun-Xin LinKey Laboratory of Tissue Engineering and Regenerative Medicine of Zhejiang Province, Zhejiang University School of Medicine, Hangzhou, China.
Varitsara BunpetchKey Laboratory of Tissue Engineering and Regenerative Medicine of Zhejiang Province, Zhejiang University School of Medicine, Hangzhou, China.
Magali CucchiariniCenter of Experimental Orthopaedics, Saarland University Medical Center and Saarland University, Kirrbergerstr. Bldg 37, D-66421, Homburg/Saar, Germany.
Nicholas D ClementDepartment of Orthopaedics and Trauma, Royal Infirmary of Edinburgh, Little France, University of Edinburgh, Edinburgh, Scotland, UK.
Christopher E MasonDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-1850-1642
Norimasa NakamuraInstitute for Medical Science in Sports, Osaka Health Science University, 1-9-27, Tenma, Kita-ku, Osaka, Osaka, 5300043, Japan.
Rameah BhondeDr. Ramesh Bhonde, Director Research, Dr. D. Y. Patil Vidyapeeth, Pimpri, Pune, 411018, India.
Zi YinKey Laboratory of Tissue Engineering and Regenerative Medicine of Zhejiang Province, Zhejiang University School of Medicine, Hangzhou, China. yinzi@zju.edu.cn.ORCID http://orcid.org/0000-0003-2892-8962
Xiao ChenDr. Li Dak Sum-Yip Yio Chin Center for Stem Cells and Regenerative Medicine and Department of Orthopedic Surgery of The Second Affiliated Hospital,, Zhejiang University School of Medicine, Hangzhou, China. chenxiao-610@zju.edu.cn.ORCID http://orcid.org/0000-0002-4438-5286
Second Affiliated Hospital of Zhejiang University · CNZhejiang University-University of Edinburgh Institute · CNDr. D.Y. Patil Vidyapeeth, Pune · INEdinburgh Royal Infirmary · GBOsaka Health Science University · JPPrince Sattam Bin Abdulaziz University · SARegenerative Medicine Institute · MXSaarland University · DEZhejiang Lab · CN

Funding

National Natural Science Foundation of China (National Science Foundation of China) 81522029, 81772418, 31570987, 81330041, 81401781, 81572157
6 · The paper itself

Abstract

While the capacity to regenerate tissues or limbs is limited in mammals, including humans, axolotls are able to regrow entire limbs and major organs after incurring a wound. The wound blastema has been extensively studied in limb regeneration. However, due to the inadequate characterization of ECM and cell subpopulations involved in the regeneration process, the discovery of the key drivers for human limb regeneration remains unknown. In this study, we applied large-scale single-cell RNA sequencing to classify cells throughout the adult axolotl limb regeneration process, uncovering a novel regeneration-specific mitochondria-related cluster supporting regeneration through energy providing and the ECM secretion (COL2+) cluster contributing to regeneration through cell-cell interactions signals. We also discovered the dedifferentiation and re-differentiation of the COL1+/COL2+ cellular subpopulation and exposed a COL2-mitochondria subcluster supporting the musculoskeletal system regeneration. On the basis of these findings, we reconstructed the dynamic single-cell transcriptome of adult axolotl limb regenerative process, and identified the novel regenerative mitochondria-related musculoskeletal populations, which yielded deeper insights into the crucial interactions between cell clusters within the regenerative microenvironment.

Indexed as

Ambystoma mexicanumAmputation, SurgicalAnimalsCell DifferentiationExtremitiesGene Expression ProfilingMitochondriaMuscle, SkeletalRegenerationRNA-SeqSingle-Cell AnalysisTranscriptome

Identifiers

PMID33116295
PMCPMC7937690
OpenAlexW3097210291

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.