Evidence map›Paper›PMID 33128724›Full record

ArticlePlant molecular biology2021

Moss PPR-SMR protein PpPPR_64 influences the expression of a psaA-psaB-rps14 gene cluster and processing of the 23S-4.5S rRNA precursor in chloroplasts.

Ayumu Takahashi, Chieko Sugita, Mizuho Ichinose, Mamoru Sugita

Abstract read
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In one paragraph

Article in Plant molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Molecular biology of mosses.Plant molecular biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ayumu TakahashiCenter for Gene Research, Nagoya University, Chikusa-ku, Nagoya, 464-8602, Japan.
Chieko SugitaCenter for Gene Research, Nagoya University, Chikusa-ku, Nagoya, 464-8602, Japan.
Mizuho IchinoseCenter for Gene Research, Nagoya University, Chikusa-ku, Nagoya, 464-8602, Japan.
Mamoru SugitaCenter for Gene Research, Nagoya University, Chikusa-ku, Nagoya, 464-8602, Japan. sugita@gene.nagoya-u.ac.jp.ORCID https://orcid.org/0000-0003-3965-5701
Nagoya University · JPKyushu University · JP

Funding

The Japan Society for the Promotion of Science JP17K08195, JP20K05957
6 · The paper itself

Abstract

key messageMoss PPR-SMR protein PpPPR_64 is a pTAC2 homolog but is functionally distinct from pTAC2. PpPPR_64 is required for psaA gene expression and its function may have evolved in mosses. The pentatricopeptide repeat (PPR) proteins are key regulatory factors responsible for the control of plant organellar gene expression. A small subset of PPR proteins possess a C-terminal small MutS-related (SMR) domain and have diverse roles in plant organellar biogenesis. However, the function of PPR-SMR proteins is not fully understood. Here, we report the function of PPR-SMR protein PpPPR_64 in the moss Physcomitrium patens. Phylogenetic analysis indicated that PpPPR_64 belongs to the same clade as the Arabidopsis PPR-SMR protein pTAC2. PpPPR_64 knockout (KO) mutants grew autotrophically but with reduced protonemata growth and the poor formation of photosystems' antenna complexes. Quantitative reverse transcription-polymerase chain reaction and RNA gel blot hybridization analyses revealed a significant reduction in transcript levels of the psaA-psaB-rps14 gene cluster but no alteration to transcript levels of most photosynthesis- and non-photosynthesis-related genes. In addition, RNA processing of 23S-4.5S rRNA precursor was impaired in the PpPPR_64 KO mutants. This suggests that PpPPR_64 is specifically involved in the expression level of the psaA-psaB-rps14 gene and in processing of the 23S-4.5S rRNA precursor. Our results indicate that PpPPR_64 is functionally distinct from pTAC2 and is a novel PPR-SMR protein required for proper chloroplast biogenesis in P. patens.

Indexed as

Multigene FamilyBinding SitesBryopsidaChloroplast ProteinsChloroplastsEvolution, MolecularGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantMutationPhylogenyPlant ProteinsRibosomal ProteinsRNA, BacterialRNA, PlantRNA PrecursorsRNA Processing, Post-Transcriptional4.5S RNAChloroplast ProteinsPlant ProteinsRibosomal ProteinsRNA, BacterialRNA, PlantRNA PrecursorsRNA, Ribosomal, 23S23S–4.5S rRNA processingBasal land plantP-class PPR proteinPhyscomitrium patensPlastidPPR-SMR proteinpsaA-psaB-rps14 tricistronic mRNA

Identifiers

PMID33128724
OpenAlexW3095444185

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.