Evidence map›Paper›PMID 33164530›Full record

ArticleNano letters2020

DNA-Origami-Based Fluorescence Brightness Standards for Convenient and Fast Protein Counting in Live Cells.

Nathan D Williams, Ane Landajuela, Ravi Kiran Kasula, Wenjiao Zhou, John T Powell, Zhiqun Xi, Farren J Isaacs, Julien Berro, Derek Toomre, Erdem Karatekin and 1 more

Abstract read
In one paragraph

Article in Nano letters, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Nathan D WilliamsDepartment of Cell Biology, Yale University School of Medicine, New Haven, Connecticut 06520, United States.
Ane LandajuelaNanobiology Institute, Yale University, West Haven, Connecticut 06516, United States.
Ravi Kiran KasulaDepartment of Cell Biology, Yale University School of Medicine, New Haven, Connecticut 06520, United States.
Wenjiao ZhouDepartment of Cell Biology, Yale University School of Medicine, New Haven, Connecticut 06520, United States.
John T PowellDepartment of Cell Biology, Yale University School of Medicine, New Haven, Connecticut 06520, United States.
Zhiqun XiDepartment of Cell Biology, Yale University School of Medicine, New Haven, Connecticut 06520, United States.
Farren J IsaacsDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut 06520, United States.ORCID 0000-0001-8615-8236
Julien BerroDepartment of Cell Biology, Yale University School of Medicine, New Haven, Connecticut 06520, United States.
Derek ToomreDepartment of Cell Biology, Yale University School of Medicine, New Haven, Connecticut 06520, United States.
Erdem KaratekinNanobiology Institute, Yale University, West Haven, Connecticut 06516, United States.
Chenxiang LinDepartment of Cell Biology, Yale University School of Medicine, New Haven, Connecticut 06520, United States.ORCID 0000-0001-7041-1946

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Yale Diabetes Research CenterP30DK045735 · NIDDK · YALE UNIVERSITY · PI GERALD I SHULMAN · 1993 to 2026
$44.0M
Molecular mechanisms of force production and force sensing during clathrin-mediated endocytosisR01GM115636 · NIGMS · YALE UNIVERSITY · PI Julien Berro · 2016 to 2026
$4.7M
Cell-free membrane remodeling guided by DNA nano-templatesDP2GM114830 · NIGMS · YALE UNIVERSITY · PI LIN, CHENXIANG · 2014 to 2014
$2.5M
Nucleation and dynamics of exocytotic fusion poresR01NS113236 · NINDS · YALE UNIVERSITY · PI KARATEKIN, ERDEM · 2019 to 2023
$1.8M
Nucleation and dynamics of exocytotic fusion poresR01GM108954 · NIGMS · YALE UNIVERSITY · PI KARATEKIN, ERDEM · 2014 to 2018
$1.6M
A Nanomechanical Toolkit to Guide Membrane Structure and DynamicsR01GM132114 · NIGMS · YALE UNIVERSITY · PI LIN, CHENXIANG · 2019 to 2022
$1.3M
Expanding the genetic code with phosphotyrosine and phosphothreonineR01GM125951 · NIGMS · YALE UNIVERSITY · PI ISAACS, FARREN J., RINEHART, JESSE · 2018 to 2021
$1.2M
Convergent Graduate Training in Engineering, Physics and BiologyT32EB019941 · NIBIB · YALE UNIVERSITY · PI O'HERN, COREY · 2016 to 2020
$998k
New strategy to measure forces at the molecular scale in vivoR21GM132661 · NIGMS · YALE UNIVERSITY · PI BERRO, JULIEN · 2019 to 2020
$461k
NCATS NIH HHS UL1 TR001863NIBIB NIH HHS T32 EB019941NIDDK NIH HHS P30 DK045735NIGMS NIH HHS DP2 GM114830NIGMS NIH HHS R01 GM108954NIGMS NIH HHS R01 GM115636NIGMS NIH HHS R01 GM125951NIGMS NIH HHS R01 GM132114NIGMS NIH HHS R21 GM132661NINDS NIH HHS R01 NS113236
6 · The paper itself

Abstract

Fluorescence microscopy has been one of the most discovery-rich methods in biology. In the digital age, the discipline is becoming increasingly quantitative. Virtually all biological laboratories have access to fluorescence microscopes, but abilities to quantify biomolecule copy numbers are limited by the complexity and sophistication associated with current quantification methods. Here, we present DNA-origami-based fluorescence brightness standards for counting 5-300 copies of proteins in bacterial and mammalian cells, tagged with fluorescent proteins or membrane-permeable organic dyes. Compared to conventional quantification techniques, our brightness standards are robust, straightforward to use, and compatible with nearly all fluorescence imaging applications, thereby providing a practical and versatile tool to quantify biomolecules via fluorescence microscopy.

Indexed as

DNAFluorescent DyesAnimalsMicroscopy, FluorescenceProteinsDNAFluorescent DyesProteinsBioconjugationBrightness standardDNA origamiFluorescent proteinLive cell imagingQuantitative microscopy

Identifiers

PMID33164530
PMCPMC7726105

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.