Evidence map›Paper›PMID 33167491›Full record

ArticleGenes2020

Identification of Genetic Susceptibility Factors Associated with Canine Gastric Dilatation-Volvulus.

Ignazio S Piras, Nieves Perdigones, Victoria Zismann, Natalia Briones, Salvatore Facista, José Luis Rivera, Elizabeth Rozanski, Cheryl A London, William P D Hendricks

Open access · goldAbstract read
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. GWAS using low-pass whole genome sequence reveals a novel locus in canine congenital idiopathic megaesophagus.Mammalian genome : official journal of the International Mammalian Genome Society · 2023
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Ignazio S PirasNeurogenomics Division, Translational Genomics Research Institute, Phoenix, AZ 85004, USA.
Nieves PerdigonesIntegrated Cancer Genomics Division, Translational Genomics Research Institute, Phoenix, AZ 85004, USA.
Victoria ZismannIntegrated Cancer Genomics Division, Translational Genomics Research Institute, Phoenix, AZ 85004, USA.
Natalia BrionesIntegrated Cancer Genomics Division, Translational Genomics Research Institute, Phoenix, AZ 85004, USA.
Salvatore FacistaIntegrated Cancer Genomics Division, Translational Genomics Research Institute, Phoenix, AZ 85004, USA.
José Luis RiveraIntegrated Cancer Genomics Division, Translational Genomics Research Institute, Phoenix, AZ 85004, USA.
Elizabeth RozanskiCummings School of Veterinary Medicine, Tufts University, Grafton, MA 01536, USA.
Cheryl A LondonCummings School of Veterinary Medicine, Tufts University, Grafton, MA 01536, USA.
William P D HendricksIntegrated Cancer Genomics Division, Translational Genomics Research Institute, Phoenix, AZ 85004, USA.ORCID 0000-0001-7192-8699
Translational Genomics Research Institute · USTufts University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Canine gastric dilatation-volvulus (GDV) is a common life-threatening condition occurring primarily in large and giant breeds with a 3.9% to 36.7% lifetime risk. The genetic correlates of GDV have not previously been systematically explored. We undertook an inter-breed genome-wide association analysis (GWAS) of 253 dogs from ten breeds including 106 healthy dogs and 147 dogs with at least one GDV episode. SNP array genotyping followed by imputation was conducted on 241 samples to identify GDV-associated single-nucleotide polymorphisms (SNPs) and copy number variations (CNVs). A subset of 33 dogs (15 healthy dogs and 18 GDV patients from the three most represented breeds) was characterized by whole genome sequencing (WGS). After genome-wide Bonferroni correction, we identified a significant putatively protective intergenic SNP (rs851737064) across all breeds. The signal was most significant in Collies, German Shorthaired Pointers, and Great Danes. Subsequent focused analysis across these three breeds identified 12 significant additional putatively protective or deleterious SNPs. Notable significant SNPs included those occurring in genes involved in gastric tone and motility including

Indexed as

Age FactorsAnimalsBreedingDNA Copy Number VariationsDog DiseasesDogsFemaleGastric DilatationGenetic Predisposition to DiseaseGenome-Wide Association StudyMalePolymorphism, Single NucleotideRisk FactorsStomach Volvulusbloatgastric dilatation volvulusGenome-Wide Association Study

Identifiers

PMID33167491
PMCPMC7694454
OpenAlexW3094770586

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.