Evidence map›Paper›PMID 33185455›Full record

ArticleJournal of proteome research2021

Quantitative Interactomics of Lck-TurboID in Living Human T Cells Unveils T Cell Receptor Stimulation-Induced Proximal Lck Interactors.

Xien Yu Chua, Timothy Aballo, William Elnemer, Melanie Tran, Arthur Salomon

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
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  7. Proximity Labeling in Plants.Annual review of plant biology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xien Yu ChuaDepartment of Molecular Pharmacology, Physiology, and Biotechnology, Brown University, Providence, Rhode Island, United States.ORCID 0000-0003-2455-9493
Timothy AballoDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, United States.
William ElnemerDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, United States.
Melanie TranDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, United States.
Arthur SalomonDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, United States.ORCID 0000-0002-7223-8996
Brown University · US

Funding

Understand the metabolic fitness of naïve T cellsP01AI091580 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JEROEN ROOSE · 2011 to 2026
$31.1M
Translational Regulation in Normal Erythropoiesis and Diamond Blackfan AnemiaP20GM121293 · NIGMS · ARKANSAS CHILDREN'S HOSPITAL RES INST · PI Alan Tackett · 2017 to 2026
$27.6M
Phosphoproteomic Analysis of T Cell Activation PathwaysR01AI083636 · NIAID · BROWN UNIVERSITY · PI SALOMON, ARTHUR ROBERT · 2010 to 2021
$4.0M
NIAID NIH HHS P01 AI091580NIAID NIH HHS R01 AI083636NIGMS NIH HHS P20 GM121293
6 · The paper itself

Abstract

While Lck has been widely recognized to play a pivotal role in the initiation of the T cell receptor (TCR) signaling pathway, an understanding of the precise regulation of Lck in T cells upon TCR activation remains elusive. Investigation of protein-protein interaction (PPI) using proximity labeling techniques such as TurboID has the potential to provide valuable molecular insights into Lck regulatory networks. By expressing Lck-TurboID in Jurkat T cells, we have uncovered a dynamic, short-range Lck protein interaction network upon 30 min of TCR stimulation. In this novel application of TurboID, we detected 27 early signaling-induced Lck-proximal interactors in living T cells, including known and novel Lck interactors, validating the discovery power of this tool. Our results revealed previously unappreciated Lck PPI which may be associated with cytoskeletal rearrangement, ubiquitination of TCR signaling proteins, activation of the mitogen-activated protein kinase cascade, coalescence of the LAT signalosome, and formation of the immunological synapse. In this study, we demonstrated for the first time in immune cells and for the kinase Lck that TurboID can be utilized to unveil PPI dynamics in living cells at a time scale consistent with early TCR signaling. Data are available

Indexed as

Lymphocyte Specific Protein Tyrosine Kinase p56(lck)Receptors, Antigen, T-CellCell CommunicationHumansJurkat CellsPhosphorylationSignal TransductionLymphocyte Specific Protein Tyrosine Kinase p56(lck)Receptors, Antigen, T-CellinteractomeLckproximity labelingT cell receptorTurboID

Identifiers

PMID33185455
PMCPMC7962135
OpenAlexW3102062652

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.