Evidence map›Paper›PMID 33227023›Full record

ArticlePLoS genetics2020

Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.

Yunpeng Wang, Ron Nudel, Michael E Benros, Kristin Skogstrand, Simon Fishilevich, iPSYCH-BROAD, Doron Lancet, Jiangming Sun, David M Hougaard, Ole A Andreassen and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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  9. Fount, fate, features, and function of renal erythropoietin-producing cells.Pflugers Archiv : European journal of physiology · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 4 countries.

Yunpeng WangThe Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Denmark.ORCID 0000-0001-9831-1090
Ron NudelThe Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Denmark.ORCID 0000-0003-2309-011X
Michael E BenrosThe Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Denmark.ORCID 0000-0003-4939-9465
Kristin SkogstrandThe Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Denmark.ORCID 0000-0002-0026-3711
Simon FishilevichDepartment of Molecular Genetics, Weizmann Institute of Science, Israel.
iPSYCH-BROAD
Doron LancetDepartment of Molecular Genetics, Weizmann Institute of Science, Israel.
Jiangming SunThe Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Denmark.ORCID 0000-0001-6814-1297
David M HougaardThe Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Denmark.
Ole A AndreassenNorwegian Centre for Mental Disorders Research (NORMENT), Institute of Clinical Medicine, University of Oslo, and Oslo University Hospital, Norway.ORCID 0000-0002-4461-3568
Preben Bo MortensenThe Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Denmark.ORCID 0000-0002-5230-9865
Alfonso BuilThe Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Denmark.ORCID 0000-0002-1863-164X
Thomas F HansenThe Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Denmark.ORCID 0000-0001-6703-7762
Wesley K ThompsonThe Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Denmark.
Thomas WergeThe Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Denmark.ORCID 0000-0003-1829-0766
Mental Health Services · DKStatens Serum Institut · DKUniversity of Copenhagen · DKOslo University Hospital · NOWeizmann Institute of Science · ILAarhus University · DK

Funding

Polygenicity, Pleiotrophy and Power: Novel Statistical Methods for Gene DiscoveryR01GM104400 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI THOMPSON, WESLEY KURT · 2014 to 2017
$1.6M
NIGMS NIH HHS R01 GM104400
6 · The paper itself

Abstract

Circulating inflammatory markers are essential to human health and disease, and they are often dysregulated or malfunctioning in cancers as well as in cardiovascular, metabolic, immunologic and neuropsychiatric disorders. However, the genetic contribution to the physiological variation of levels of circulating inflammatory markers is largely unknown. Here we report the results of a genome-wide genetic study of blood concentration of ten cytokines, including the hitherto unexplored calcium-binding protein (S100B). The study leverages a unique sample of neonatal blood spots from 9,459 Danish subjects from the iPSYCH initiative. We estimate the SNP-heritability of marker levels as ranging from essentially zero for Erythropoietin (EPO) up to 73% for S100B. We identify and replicate 16 associated genomic regions (p < 5 x 10-9), of which four are novel. We show that the associated variants map to enhancer elements, suggesting a possible transcriptional effect of genomic variants on the cytokine levels. The identification of the genetic architecture underlying the basic levels of cytokines is likely to prompt studies investigating the relationship between cytokines and complex disease. Our results also suggest that the genetic architecture of cytokines is stable from neonatal to adult life.

Indexed as

Quantitative Trait LociBiomarkersCohort StudiesCytokinesDenmarkEnhancer Elements, GeneticFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansInfant, NewbornInflammationMalePolymorphism, Single NucleotideS100 Calcium Binding Protein beta SubunitBiomarkersCytokinesS100B protein, humanS100 Calcium Binding Protein beta Subunit

Identifiers

PMID33227023
PMCPMC7721185
OpenAlexW3109076781

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.