Evidence map›Paper›PMID 33274271›Full record

ReviewACS central science2020

Quantitative Imaging of Biochemistry

Yamuna Krishnan, Junyi Zou, Maulik S Jani

Open access · diamondAbstract readReview
In one paragraph

Review in ACS central science, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 26 citations in OpenAlex.

  1. Quantitative Chemical Imaging of Organelles.Accounts of chemical research · 2024
    Article
  2. Article
  3. Article
  4. Optogenetics meets physiology.Pflugers Archiv : European journal of physiology · 2023
    Article
  5. Article
  6. Article
  7. Engineering Fluorophore Recycling in a Fluorogenic RNA Aptamer.Angewandte Chemie (International ed. in English) · 2021
    Article
  8. Tubular lysosomes harbor active ion gradients and poise macrophages for phagocytosis.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yamuna KrishnanDepartment of Chemistry, University of Chicago, Chicago, Illinois 60637, United States.
Junyi ZouDepartment of Chemistry, University of Chicago, Chicago, Illinois 60637, United States.
Maulik S JaniDepartment of Chemistry, University of Chicago, Chicago, Illinois 60637, United States.
University of Chicago · US

Funding

A mechanism of lysosomal Calcium entryR21NS114428 · NINDS · UNIVERSITY OF CHICAGO · PI KRISHNAN, YAMUNA · 2019 to 2020
$408k
NINDS NIH HHS R21 NS114428
6 · The paper itself

Abstract

Biochemical reactions in eukaryotic cells occur in subcellular, membrane-bound compartments called organelles. Each kind of organelle is characterized by a unique lumenal chemical composition whose stringent regulation is vital to proper organelle function. Disruption of the lumenal ionic content of organelles is inextricably linked to disease. Despite their vital roles in cellular homeostasis, there are large gaps in our knowledge of organellar chemical composition largely from a lack of suitable probes. In this Outlook, we describe how, using organelle-targeted ratiometric probes, one can quantitatively image the lumenal chemical composition and biochemical activity inside organelles. We discuss how excellent fluorescent detection chemistries applied largely to the cytosol may be expanded to study organelles by chemical imaging at subcellular resolution in live cells. DNA-based reporters are a new and versatile platform to enable such approaches because the resultant probes have precise ratiometry and accurate subcellular targeting and are able to map multiple chemicals simultaneously. Quantitatively mapping lumenal ions and biochemical activity can drive the discovery of new biology and biomedical applications.

Identifiers

PMID33274271
PMCPMC7706076
OpenAlexW3092894390

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.