Evidence map›Paper›PMID 33339270›Full record

ArticleInternational journal of molecular sciences2020

Application of WES Towards Molecular Investigation of Congenital Cataracts: Identification of Novel Alleles and Genes in a Hospital-Based Cohort of South India.

Dinesh Kumar Kandaswamy, Makarla Venkata Sathya Prakash, Jochen Graw, Samuel Koller, István Magyar, Amit Tiwari, Wolfgang Berger, Sathiyaveedu Thyagarajan Santhiya

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05782452 (Genetic Diagnosis and Phenotype-genotype Correlation in a Large Chinese Cohort of Congenital Cataracts), which is not on this map. Cited by 10 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 2 pooled it
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05782452 completednot on this mapstarted 2021, after this paper: background citation

Genetic Diagnosis and Phenotype-genotype Correlation in a Large Chinese Cohort of Congenital Cataracts

TypeobservationalSponsorZhongshan Ophthalmic Center, Sun Yat-sen UniversityRan2021 to 2022Enrolled115ConditionsCongenital CataractArmsOphthalmic examination, Whole-exome sequencing
3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 2 syntheses or guidelines pooled it, 18 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Abnormal function ofInternational journal of ophthalmology · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Case Report: AFrontiers in genetics · 2022
    Article
  9. Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 4 countries.

Dinesh Kumar KandaswamyDepartment of Genetics, Dr. ALM Post Graduate Institute of Basic Medical Sciences, University of Madras, Tamil Nadu 600 113, India.ORCID 0000-0002-6336-1722
Makarla Venkata Sathya PrakashRegional Institute of Ophthalmology, Government Eye Hospital, Egmore, Chennai 600 008, India.
Jochen GrawInstitute of Developmental Genetics, Helmholtz Zentrum Munchen, D-85764 Munich, Germany.ORCID 0000-0003-0298-9660
Samuel KollerInstitute of Medical Molecular Genetics, University of Zurich, CH-8952 Schlieren, Switzerland.ORCID 0000-0003-0965-0539
István MagyarInstitute of Medical Molecular Genetics, University of Zurich, CH-8952 Schlieren, Switzerland.
Amit TiwariInstitute of Medical Molecular Genetics, University of Zurich, CH-8952 Schlieren, Switzerland.
Wolfgang BergerInstitute of Medical Molecular Genetics, University of Zurich, CH-8952 Schlieren, Switzerland.ORCID 0000-0002-0370-3815
Sathiyaveedu Thyagarajan SanthiyaDepartment of Genetics, Dr. ALM Post Graduate Institute of Basic Medical Sciences, University of Madras, Tamil Nadu 600 113, India.
University of Zurich · CHUniversity of Madras · INHelmholtz Zentrum München · DE

Funding

Deutscher Akademischer Austauschdienst 91525094
6 · The paper itself

Abstract

Congenital cataracts are the prime cause for irreversible blindness in children. The global incidence of congenital cataract is 2.2-13.6 per 10,000 births, with the highest prevalence in Asia. Nearly half of the congenital cataracts are of familial nature, with a predominant autosomal dominant pattern of inheritance. Over 38 of the 45 mapped loci for isolated congenital or infantile cataracts have been associated with a mutation in a specific gene. The clinical and genetic heterogeneity of congenital cataracts makes the molecular diagnosis a bit of a complicated task. Hence, whole exome sequencing (WES) was utilized to concurrently screen all known cataract genes and to examine novel candidate factors for a disease-causing mutation in probands from 11 pedigrees affected with familial congenital cataracts. Analysis of the WES data for known cataract genes identified causative mutations in six pedigrees (55%) in

Indexed as

AllelesCataractEphrin-A2FemaleGenetic TestingHumansMaleMicrotubule-Associated ProteinsMutationNuclear Receptor CoactivatorsPAX6 Transcription FactorPedigreeProcollagen-Proline DioxygenaseReceptor, EphA2RibonucleoproteinsWhole Genome SequencingEPHA2 protein, humanEphrin-A2FYCO1 protein, humanMicrotubule-Associated ProteinsNCOA6 protein, humanNuclear Receptor CoactivatorsP3H2 protein, humanPAX6 protein, humanPAX6 Transcription FactorProcollagen-Proline DioxygenaseReceptor, EphA2RibonucleoproteinsTdrd7 protein, humanclinical heterogeneitycongenital cataractEPHA2FYCO1genetic heterogeneityhearing and speech impairmentNCOA6P3H2PAX6TDRD7WES

Identifiers

PMID33339270
PMCPMC7765966
OpenAlexW3113290644

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.