Evidence map›Paper›PMID 33394034›Full record

ArticleBiology of reproduction2021

A transgenic DND1GFP fusion allele reports in vivo expression and RNA-binding targets in undifferentiated mouse germ cells†.

Victor A Ruthig, Tetsuhiro Yokonishi, Matthew B Friedersdorf, Sofia Batchvarova, Josiah Hardy, Jason A Garness, Jack D Keene, Blanche Capel

Open access · greenAbstract read
In one paragraph

Article in Biology of reproduction, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Victor A RuthigDepartment of Cell Biology, Duke University Medical Center, Durham, NC, USA.
Tetsuhiro YokonishiDepartment of Cell Biology, Duke University Medical Center, Durham, NC, USA.
Matthew B FriedersdorfDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC, USA.
Sofia BatchvarovaDepartment of Cell Biology, Duke University Medical Center, Durham, NC, USA.
Josiah HardyDepartment of Cell Biology, Duke University Medical Center, Durham, NC, USA.
Jason A GarnessDepartment of Cell Biology, Duke University Medical Center, Durham, NC, USA.
Jack D KeeneDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC, USA.
Blanche CapelDepartment of Cell Biology, Duke University Medical Center, Durham, NC, USA.
Duke Medical Center · USDuke University Hospital · US

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI Laura Fish · 1985 to 2026
$174.8M
Opposing Pathways in Mammalian Sex DeterminationR37HD039963 · NICHD · DUKE UNIVERSITY · PI CAPEL, BLANCHE · 2011 to 2020
$3.5M
DND1 Mediates Epigenetic Reprogramming During Cell Cycle Arrest In Male Germ CellsR01HD103064 · NICHD · DUKE UNIVERSITY · PI CAPEL, BLANCHE · 2021 to 2025
$2.0M
DND1 Mediated Posttranscriptional Regulation in Murine Prospermatogonia During G1/G0 ArrestF32GM129956 · NIGMS · DUKE UNIVERSITY · PI RUTHIG, VICTOR A. · 2018 to 2020
$140k
NCI NIH HHS P30 CA014236NICHD NIH HHS R01 HD103064NICHD NIH HHS R37 HD039963NIGMS NIH HHS F32 GM129956
6 · The paper itself

Abstract

In vertebrates, the RNA-binding protein (RBP) dead end 1 (DND1) is essential for primordial germ cell (PGC) survival and maintenance of cell identity. In multiple species, Dnd1 loss or mutation leads to severe PGC loss soon after specification or, in some species, germ cell transformation to somatic lineages. Our investigations into the role of DND1 in PGC specification and differentiation have been limited by the absence of an available antibody. To address this problem, we used CRISPR/Cas9 gene editing to establish a transgenic mouse line carrying a DND1GFP fusion allele. We present imaging analysis of DND1GFP expression showing that DND1GFP expression is heterogeneous among male germ cells (MGCs) and female germ cells (FGCs). DND1GFP was detected in MGCs throughout fetal life but lost from FGCs at meiotic entry. In postnatal and adult testes, DND1GFP expression correlated with classic markers for the premeiotic spermatogonial population. Utilizing the GFP tag for RNA immunoprecipitation (RIP) analysis in MGCs validated this transgenic as a tool for identifying in vivo transcript targets of DND1. The DND1GFP mouse line is a novel tool for isolation and analysis of embryonic and fetal germ cells, and the spermatogonial population of the postnatal and adult testis.

Indexed as

AllelesAnimalsCell DifferentiationEmbryo, MammalianFemaleGene Expression Regulation, DevelopmentalGenes, ReporterGerm CellsGreen Fluorescent ProteinsMaleMiceMice, Inbred C57BLMice, TransgenicNeoplasm ProteinsRecombinant Fusion ProteinsRNA-Binding ProteinsDnd1 protein, mouseGreen Fluorescent ProteinsNeoplasm ProteinsRecombinant Fusion ProteinsRNA-Binding Proteinsdead end 1male germ cellmeiosisRNA-binding proteinRNA immunoprecipitationspermatogonia

Identifiers

PMID33394034
PMCPMC8324984
OpenAlexW3118348923

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.