Evidence map›Paper›PMID 33408735›Full record

ArticleFrontiers in genetics2020

Transcriptome Analysis of the Cerebellum of Mice Fed a Manganese-Deficient Diet.

Young Ah Seo, Eun-Kyung Choi, Luisa Aring, Molly Paschall, Shigeki Iwase

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Dietary Manganese Modulates Microbiota and Intestinal N-Acylethanolamines in a Sex-Specific Manner in Mice With Diet-Induced Obesity.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Young Ah SeoDepartment of Nutritional Sciences, University of Michigan School of Public Health, Ann Arbor, MI, United States.
Eun-Kyung ChoiDepartment of Nutritional Sciences, University of Michigan School of Public Health, Ann Arbor, MI, United States.
Luisa AringDepartment of Nutritional Sciences, University of Michigan School of Public Health, Ann Arbor, MI, United States.
Molly PaschallDepartment of Nutritional Sciences, University of Michigan School of Public Health, Ann Arbor, MI, United States.
Shigeki IwaseDepartment of Human Genetics, Michigan Medicine, University of Michigan, Ann Arbor, MI, United States.
University of Michigan–Ann Arbor · USMichigan Medicine · US

Funding

A Neuron-specific Methyl-histone Regulatory ComplexR01NS116008 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Shigeki Iwase · 2020 to 2026
$3.6M
Manganese in Inflammatory Bowel DiseaseR01DK123022 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Young Ah Seo · 2020 to 2026
$3.2M
Neutralizing epigenomes in neurodevelopment disordersR01NS089896 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI IWASE, SHIGEKI · 2015 to 2019
$2.1M
Exploring the Roles of Manganese in NeuronsR21NS112974 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SEO, YOUNG AH · 2020 to 2020
$429k
NIDDK NIH HHS R01 DK123022NINDS NIH HHS R01 NS089896NINDS NIH HHS R01 NS116008NINDS NIH HHS R21 NS112974
6 · The paper itself

Abstract

Manganese (Mn), primarily acquired through diet, is required for brain function and development. Epidemiological studies have found an association between both low and high levels of Mn and impaired neurodevelopment in children. Recent genetic studies have revealed that patients with congenital Mn deficiency display severe psychomotor disability and cerebral and cerebellar atrophy. Although the impact of Mn on gene expression is beginning to be appreciated, Mn-dependent gene expression remains to be explored in vertebrate animals. The goal of this study was to use a mouse model to define the impact of a low-Mn diet on brain metal levels and gene expression. We interrogated gene expression changes in the Mn-deficient mouse brain at the genome-wide scale by RNA-seq analysis of the cerebellum of mice fed low or normal Mn diets. A total of 137 genes were differentially expressed in Mn-deficient cerebellums compared with Mn-adequate cerebellums (

Indexed as

cerebellummanganeseneurodevelopmentspliceosometranscriptome

Identifiers

PMID33408735
PMCPMC7780674
OpenAlexW3108099534

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.