Evidence map›Paper›PMID 33419731›Full record

ArticleGenome research2021

A mosquito small RNA genomics resource reveals dynamic evolution and host responses to viruses and transposons.

Qicheng Ma, Satyam P Srivastav, Stephanie Gamez, Gargi Dayama, Fabiana Feitosa-Suntheimer, Edward I Patterson, Rebecca M Johnson, Erik M Matson, Alexander S Gold, Douglas E Brackney and 7 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Genome research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
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  8. SomaticiScience · 2025
    Article
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  14. Review
  15. Viruses · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Extending and Running the Mosquito Small RNA Genomics Resource Pipeline.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Qicheng Ma *Department of Biochemistry, Boston University School of Medicine, Boston, Massachusetts 02118, USA.
Satyam P Srivastav *Department of Biochemistry, Boston University School of Medicine, Boston, Massachusetts 02118, USA.
Stephanie Gamez *Division of Biological Sciences, Section of Cell and Developmental Biology, University of California San Diego, La Jolla, California 92093, USA.
Gargi DayamaDepartment of Biochemistry, Boston University School of Medicine, Boston, Massachusetts 02118, USA.
Fabiana Feitosa-SuntheimerDepartment of Microbiology and the National Emerging Infectious Disease Laboratory, Boston University School of Medicine, Boston, Massachusetts 02118, USA.
Edward I PattersonDepartments of Vector Biology and Tropical Disease Biology, Centre for Neglected Tropical Diseases, Liverpool School of Tropical Medicine, Liverpool L3 5QA, United Kingdom.
Rebecca M JohnsonDepartment of Entomology, Center for Infectious Disease Dynamics, and the Huck Institutes for the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Erik M MatsonDepartment of Biochemistry, Boston University School of Medicine, Boston, Massachusetts 02118, USA.ORCID 0000-0001-5380-991X
Alexander S GoldDepartment of Microbiology and the National Emerging Infectious Disease Laboratory, Boston University School of Medicine, Boston, Massachusetts 02118, USA.
Douglas E BrackneyDepartment of Environmental Sciences, The Connecticut Agricultural Experiment Station, New Haven, Connecticut 06511, USA.
John H ConnorDepartment of Microbiology and the National Emerging Infectious Disease Laboratory, Boston University School of Medicine, Boston, Massachusetts 02118, USA.
Tonya M ColpittsDepartment of Microbiology and the National Emerging Infectious Disease Laboratory, Boston University School of Medicine, Boston, Massachusetts 02118, USA.
Grant L HughesDepartments of Vector Biology and Tropical Disease Biology, Centre for Neglected Tropical Diseases, Liverpool School of Tropical Medicine, Liverpool L3 5QA, United Kingdom.ORCID 0000-0002-7567-7185
Jason L RasgonDepartment of Entomology, Center for Infectious Disease Dynamics, and the Huck Institutes for the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.ORCID 0000-0002-4050-8429
Tony NolanDepartments of Vector Biology and Tropical Disease Biology, Centre for Neglected Tropical Diseases, Liverpool School of Tropical Medicine, Liverpool L3 5QA, United Kingdom.
Omar S AkbariDivision of Biological Sciences, Section of Cell and Developmental Biology, University of California San Diego, La Jolla, California 92093, USA.ORCID 0000-0002-6853-9884
Nelson C LauDepartment of Biochemistry, Boston University School of Medicine, Boston, Massachusetts 02118, USA.ORCID 0000-0001-9907-1404
Boston University · USLiverpool School of Tropical Medicine · GBPennsylvania State University · USUniversity of California San Diego · USConnecticut Agricultural Experiment Station · US

Funding

Hologenomic basis of WNV vector competence in Culex tarsalisR01AI150251 · NIAID · PENNSYLVANIA STATE UNIVERSITY, THE · PI RASGON, JASON L · 2019 to 2024
$2.7M
Somatic and germline gene transduction in mosquitoesR01AI128201 · NIAID · PENNSYLVANIA STATE UNIVERSITY, THE · PI Jason L Rasgon · 2017 to 2026
$2.4M
Development of synthetic viral circuitry to regulate viruses in mosquito disease vectorsDP2AI152071 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AKBARI, OMAR SULTAN · 2019 to 2019
$2.4M
Transposon landscapes and transcriptome diversity in aging neuronsR01AG052465 · NIA · BRANDEIS UNIVERSITY · PI LAU, NELSON C · 2016 to 2020
$2.0M
Wolbachia-induced enhancement of human arboviral pathogensR01AI116636 · NIAID · PENNSYLVANIA STATE UNIVERSITY, THE · PI RASGON, JASON L · 2016 to 2020
$1.9M
The interplay between transposons and piRNA pathways.R01GM135215 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI LAU, NELSON C · 2020 to 2023
$1.8M
THE IMPACT OF PIWI ASSOCIATED TRANSCRIPTS IN XENOPUS GERM CELL DEVELOPMENTR21HD088792 · NICHD · BOSTON UNIVERSITY MEDICAL CAMPUS · PI LAU, NELSON C · 2017 to 2018
$469k
Effects of pre-existing dengue virus immunity on Zika virus infectionR21AI129881 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI COLPITTS, TONYA MICHELLE · 2017 to 2018
$453k
Assessment of infection route and vulnerability of neural precursor classes to Zika virusR21NS101151 · NINDS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI CONNOR, JOHN H, HAYDAR, TARIK F · 2016 to 2017
$452k
Role for polyamines in Ebola Virus ReplicationR21AI121933 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI CONNOR, JOHN H · 2016 to 2017
$452k
Microbial interplay between ZIKA virus and the native microbiome in mosquitoesR21AI129507 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HUGHES, GRANT LESLIE · 2017 to 2018
$371k
Exploiting gnotobiotic systems to examine microbiota acquisition in mosquitoes and for microbiome transplantationsR21AI138074 · NIAID · TMLIVERPOOL SCHOOL OF TROPICAL MEDICINE · PI HUGHES, GRANT LESLIE · 2018 to 2019
$296k
Biotechnology and Biological Sciences Research Council AV/PP0020/1NCEZID CDC HHS U01 CK000509NIAID NIH HHS DP2 AI152071NIAID NIH HHS R01 AI116636NIAID NIH HHS R01 AI128201NIAID NIH HHS R01 AI150251NIAID NIH HHS R21 AI121933NIAID NIH HHS R21 AI129507NIAID NIH HHS R21 AI129881NIAID NIH HHS R21 AI138074NIA NIH HHS R01 AG052465NICHD NIH HHS R21 HD088792NIGMS NIH HHS R01 GM135215NINDS NIH HHS R21 NS101151
6 · The paper itself

Abstract

Although mosquitoes are major transmission vectors for pathogenic arboviruses, viral infection has little impact on mosquito health. This immunity is caused in part by mosquito RNA interference (RNAi) pathways that generate antiviral small interfering RNAs (siRNAs) and Piwi-interacting RNAs (piRNAs). RNAi also maintains genome integrity by potently repressing mosquito transposon activity in the germline and soma. However, viral and transposon small RNA regulatory pathways have not been systematically examined together in mosquitoes. Therefore, we developed an integrated mosquito small RNA genomics (MSRG) resource that analyzes the transposon and virus small RNA profiles in mosquito cell cultures and somatic and gonadal tissues across four medically important mosquito species. Our resource captures both somatic and gonadal small RNA expression profiles within mosquito cell cultures, and we report the evolutionary dynamics of a novel Mosquito-Conserved piRNA Cluster Locus (MCpiRCL) made up of satellite DNA repeats. In the larger culicine mosquito genomes we detected highly regular periodicity in piRNA biogenesis patterns coinciding with the expansion of Piwi pathway genes. Finally, our resource enables detection of cross talk between piRNA and siRNA populations in mosquito cells during a response to virus infection. The MSRG resource will aid efforts to dissect and combat the capacity of mosquitoes to tolerate and spread arboviruses.

Indexed as

GenomicsVirusesAnimalsCulicidaeDNA Transposable ElementsRNA, Small InterferingDNA Transposable ElementsRNA, Small Interfering

Identifiers

PMID33419731
PMCPMC7919454
OpenAlexW3120540968

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.