Evidence map›Paper›PMID 33431870›Full record

ArticleNature communications2021

The Arabidopsis NOT4A E3 ligase promotes PGR3 expression and regulates chloroplast translation.

Mark Bailey, Aiste Ivanauskaite, Julia Grimmer, Oluwatunmise Akintewe, Adrienne C Payne, Rory Osborne, Anne-Marie Labandera, Ross D Etherington, Marjaana Rantala, Sacha Baginsky and 2 more

RetractedOpen access · goldAbstract readRetracted Publication
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Mark BaileySchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK.ORCID http://orcid.org/0000-0003-1843-9348
Aiste IvanauskaiteMolecular Plant Biology, University of Turku, 20520, Turku, Finland.ORCID http://orcid.org/0000-0002-1149-5243
Julia GrimmerInstitute of Biochemistry and Biotechnology, Martin-Luther-University Halle-Wittenberg, Kurt-Mothes-Str. 3a, 06120, Halle, Saale, Germany.
Oluwatunmise AkinteweSchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK.
Adrienne C PayneSchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK.
Rory OsborneSchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK.
Anne-Marie LabanderaSchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK.
Ross D EtheringtonSchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK.ORCID http://orcid.org/0000-0002-2909-4771
Marjaana RantalaMolecular Plant Biology, University of Turku, 20520, Turku, Finland.ORCID http://orcid.org/0000-0002-2233-3805
Sacha BaginskyInstitute of Biochemistry and Biotechnology, Martin-Luther-University Halle-Wittenberg, Kurt-Mothes-Str. 3a, 06120, Halle, Saale, Germany.ORCID http://orcid.org/0000-0002-5440-3898
Paula MuloMolecular Plant Biology, University of Turku, 20520, Turku, Finland.ORCID http://orcid.org/0000-0002-8728-3204
Daniel J GibbsSchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK. d.gibbs@bham.ac.uk.ORCID http://orcid.org/0000-0002-4100-6682
University of Birmingham · GBUniversity of Turku · FIMartin Luther University Halle-Wittenberg · DERothamsted Research · GB

Funding

Biotechnology and Biological Sciences Research Council BB/M020568/1Biotechnology and Biological Sciences Research Council BB/T004002/1
6 · The paper itself

Abstract

Chloroplast function requires the coordinated action of nuclear- and chloroplast-derived proteins, including several hundred nuclear-encoded pentatricopeptide repeat (PPR) proteins that regulate plastid mRNA metabolism. Despite their large number and importance, regulatory mechanisms controlling PPR expression are poorly understood. Here we show that the Arabidopsis NOT4A ubiquitin-ligase positively regulates the expression of PROTON GRADIENT REGULATION 3 (PGR3), a PPR protein required for translating several thylakoid-localised photosynthetic components and ribosome subunits within chloroplasts. Loss of NOT4A function leads to a strong depletion of cytochrome b

Indexed as

Protein BiosynthesisArabidopsisArabidopsis ProteinsChloroplastsGene Expression Regulation, PlantGene OntologyMutationPhotosynthesisProtein DomainsRibosomesRNA-Binding ProteinsRNA, MessengerSeedlingsUbiquitin-Protein LigasesArabidopsis ProteinsAT5G60170 protein, ArabidopsisPGR3 protein, ArabidopsisRNA-Binding ProteinsRNA, MessengerUbiquitin-Protein Ligases

Identifiers

PMID33431870
PMCPMC7801604
OpenAlexW3119246777

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.