Evidence map›Paper›PMID 33461614›Full record

ArticleParasites & vectors2021

RNAi gene knockdown in the poultry red mite, Dermanyssus gallinae (De Geer 1778), a tool for functional genomics.

Wan Chen, Kathryn Bartley, Francesca Nunn, Alan S Bowman, Jeremy M Sternberg, Stewart T G Burgess, Alasdair J Nisbet, Daniel R G Price

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
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  4. An RNA Interference Tool to Silence Genes inInternational journal of molecular sciences · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Wan ChenMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, EH26 0PZ, UK.
Kathryn BartleyMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, EH26 0PZ, UK.
Francesca NunnMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, EH26 0PZ, UK.
Alan S BowmanInstitute of Biological and Environmental Sciences, School of Biological Sciences, University of Aberdeen, Aberdeen, AB24 3FX, UK.
Jeremy M SternbergInstitute of Biological and Environmental Sciences, School of Biological Sciences, University of Aberdeen, Aberdeen, AB24 3FX, UK.
Stewart T G BurgessMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, EH26 0PZ, UK.
Alasdair J NisbetMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, EH26 0PZ, UK.
Daniel R G PriceMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, EH26 0PZ, UK. Daniel.Price@moredun.ac.uk.ORCID http://orcid.org/0000-0002-4819-0654
Moredun Research Institute · GBUniversity of Aberdeen · GB

Funding

Moredun Foundation PhD StudentshipMoredun Foundation Research FellowshipScottish Government Rural Affairs, Food and the Environment (RAFE) Strategic Research Portfolio 2016-2021University of Aberdeen Ph.D. Studentship
6 · The paper itself

Abstract

backgroundThe avian haematophagous ectoparasite Dermanyssus gallinae, commonly known as the poultry red mite, causes significant economic losses to the egg-laying industry worldwide and also represents a significant welfare threat. Current acaricide-based controls are unsustainable due to the mite's ability to rapidly develop resistance, thus developing a novel sustainable means of control for D. gallinae is a priority. RNA interference (RNAi)-mediated gene silencing is a valuable tool for studying gene function in non-model organisms, but is also emerging as a novel tool for parasite control.

methodsHere we use an in silico approach to identify core RNAi pathway genes in the recently sequenced D. gallinae genome. In addition we utilise an in vitro feeding device to deliver double-stranded (ds) RNA to D. gallinae targeting the D. gallinae vATPase subunit A (Dg vATPase A) gene and monitor gene knockdown using quantitative PCR (qPCR).

resultsCore components of the small interfering RNA (siRNA) and microRNA (miRNA) pathways were identified in D. gallinae, which indicates that these gene silencing pathways are likely functional. Strikingly, the P-element-induced wimpy testis (PIWI)-interacting RNA (piRNA) pathway was absent in D. gallinae. In addition, feeding Dg vATPase A dsRNA to adult female D. gallinae resulted in silencing of the targeted gene compared to control mites fed non-specific lacZ dsRNA. In D. gallinae, dsRNA-mediated gene knockdown was rapid, being detectable 24 h after oral delivery of the dsRNA, and persisted for at least 120 h.

conclusionsThis study shows the presence of core RNAi machinery components in the D. gallinae genome. In addition, we have developed a robust RNAi methodology for targeting genes in D. gallinae that will be of value for studying genes of unknown function and validating potential control targets in D. gallinae.

Indexed as

RNA InterferenceAdenosine TriphosphatasesAnimalsArthropod ProteinsChickensComputer SimulationFemaleGene Knockdown TechniquesGenomicsMicroRNAsMite InfestationsMitesPoultryPoultry DiseasesAdenosine TriphosphatasesArthropod ProteinsMicroRNAsFunctional genomicsGene knockdownGene silencingPoultry red miteRNA interference

Identifiers

PMID33461614
PMCPMC7813172
OpenAlexW3122599294

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.