Evidence map›Paper›PMID 33469460›Full record

ArticleFrontiers in plant science2020

Homozygosity Mapping Reveals Population History and Trait Architecture in Self-Incompatible Pear (

Satish Kumar, Cecilia Hong Deng, Martin Hunt, Chris Kirk, Claudia Wiedow, Daryl Rowan, Jun Wu, Lester Brewer

Abstract read
In one paragraph

Article in Frontiers in plant science, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Satish KumarHawke's Bay Research Centre, The New Zealand Institute for Plant and Food Research Limited, Havelock North, New Zealand.
Cecilia Hong DengMount Albert Research Centre, The New Zealand Institute for Plant and Food Research Limited, Auckland, New Zealand.
Martin HuntPalmerston North Research Centre, The New Zealand Institute for Plant and Food Research Limited, Palmerston North, New Zealand.
Chris KirkPalmerston North Research Centre, The New Zealand Institute for Plant and Food Research Limited, Palmerston North, New Zealand.
Claudia WiedowPalmerston North Research Centre, The New Zealand Institute for Plant and Food Research Limited, Palmerston North, New Zealand.
Daryl RowanPalmerston North Research Centre, The New Zealand Institute for Plant and Food Research Limited, Palmerston North, New Zealand.
Jun WuCentre of Pear Engineering Technology Research, Nanjing Agricultural University, Nanjing, China.
Lester BrewerMotueka Research Centre, The New Zealand Institute for Plant and Food Research Limited, Motueka, New Zealand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Runs of homozygosity (ROH) have been widely used to study population history and trait architecture in humans and livestock species, but their application in self-incompatible plants has not been reported. The distributions of ROH in 199 accessions representing Asian pears (45), European pears (109), and interspecific hybrids (45) were investigated using genotyping-by-sequencing in this study. Fruit phenotypes including fruit weight, firmness, Brix, titratable acidity, and flavor volatiles were measured for genotype-phenotype analyses. The average number of ROH and the average total genomic length of ROH were 6 and 11 Mb, respectively, in Asian accessions, and 13 and 30 Mb, respectively, in European accessions. Significant associations between genomic inbreeding coefficients (F

Indexed as

genome wide association studygenotyping-by-sequencinggermplasminbreedingPyrusquantitative trait lociruns of homozygositysignatures of selection

Identifiers

PMID33469460
PMCPMC7813798

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.