Evidence map›Paper›PMID 33484251›Full record

ReviewJournal of experimental botany2021

RNA architecture influences plant biology.

Jiaying Zhu, Changhao Li, Xu Peng, Xiuren Zhang

Abstract readReview
In one paragraph

Review in Journal of experimental botany, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Functions and mechanisms of RNA helicases in plants.Journal of experimental botany · 2023
    Review
  10. Review
  11. Article
  12. Recent advances in RNA structurome.Science China. Life sciences · 2022
    Review
  13. Review
  14. ProbingFrontiers in plant science · 2022
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jiaying ZhuDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Changhao LiDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Xu PengDepartment of Medical Physiology, College of Medicine, Texas A&M University, College Station, TX 77843, USA.
Xiuren ZhangDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.

Funding

Roles of SWI/SNF complexes in posttranscriptional processing of RNAR01GM132401 · NIGMS · TEXAS A&M AGRILIFE RESEARCH · PI ZHANG, XIUREN · 2019 to 2022
$1.4M
Suppression mechanism of Geminivirus-encoded TrAP proteinR01GM127742 · NIGMS · TEXAS A&M AGRILIFE RESEARCH · PI ZHANG, XIUREN · 2019 to 2022
$1.2M
NIGMS NIH HHS R01 GM127742NIGMS NIH HHS R01 GM132401
6 · The paper itself

Abstract

The majority of the genome is transcribed to RNA in living organisms. RNA transcripts can form astonishing arrays of secondary and tertiary structures via Watson-Crick, Hoogsteen, or wobble base pairing. In vivo, RNA folding is not a simple thermodynamic event of minimizing free energy. Instead, the process is constrained by transcription, RNA-binding proteins, steric factors, and the microenvironment. RNA secondary structure (RSS) plays myriad roles in numerous biological processes, such as RNA processing, stability, transportation, and translation in prokaryotes and eukaryotes. Emerging evidence has also implicated RSS in RNA trafficking, liquid-liquid phase separation, and plant responses to environmental variations such as temperature and salinity. At molecular level, RSS is correlated with splicing, polyadenylation, protein synthesis, and miRNA biogenesis and functions. In this review, we summarize newly reported methods for probing RSS in vivo and functions and mechanisms of RSS in plant physiology.

Indexed as

RNARNA Processing, Post-TranscriptionalBase PairingBiologyNucleic Acid ConformationRNA, PlantRNA SplicingRNARNA, PlantmiRNAphase separationpolyadenylationRNA secondary structureRNA traffickingsalinity stresssplicingtranslation

Identifiers

PMID33484251
PMCPMC8130982

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.