Evidence map›Paper›PMID 33532691›Full record

ArticlePlant direct2021

Modeling multiple phenotypes in wheat using data-driven genomic exploratory factor analysis and Bayesian network learning.

Mehdi Momen, Madhav Bhatta, Waseem Hussain, Haipeng Yu, Gota Morota

Abstract read
In one paragraph

Article in Plant direct, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  6. Dissecting Breeders' SenseFrontiers in plant science · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mehdi MomenDepartment of Animal and Poultry Sciences Virginia Polytechnic Institute and State University Blacksburg VA USA.
Madhav BhattaDepartment of Agronomy University of Wisconsin-Madison Madison WI USA.ORCID https://orcid.org/0000-0002-4959-0481
Waseem HussainInternational Rice Research Institute Los Banos Philippines.
Haipeng YuDepartment of Animal and Poultry Sciences Virginia Polytechnic Institute and State University Blacksburg VA USA.
Gota MorotaDepartment of Animal and Poultry Sciences Virginia Polytechnic Institute and State University Blacksburg VA USA.ORCID https://orcid.org/0000-0002-3567-6911

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inferring trait networks from a large volume of genetically correlated diverse phenotypes such as yield, architecture, and disease resistance can provide information on the manner in which complex phenotypes are interrelated. However, studies on statistical methods tailored to multidimensional phenotypes are limited, whereas numerous methods are available for evaluating the massive number of genetic markers. Factor analysis operates at the level of latent variables predicted to generate observed responses. The objectives of this study were to illustrate the manner in which data-driven exploratory factor analysis can map observed phenotypes into a smaller number of latent variables and infer a genomic latent factor network using 45 agro-morphological, disease, and grain mineral phenotypes measured in synthetic hexaploid wheat lines (

Indexed as

Bayesian networkconfirmatory factor analysisexploratory factor analysismulti‐traitwheat

Identifiers

PMID33532691
PMCPMC7833463

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.