Evidence map›Paper›PMID 33535966›Full record

ArticleBMC microbiology2021

Helicobacter pylori 23S rRNA gene A2142G, A2143G, T2182C, and C2195T mutations associated with clarithromycin resistance detected in Sudanese patients.

Aalaa Mahgoub Albasha, Maram M Elnosh, Esraa Hassan Osman, Duha M Zeinalabdin, Amira A M Fadl, Musa Abdalla Ali, Hisham N Altayb

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Pooled it
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  5. Towards EffectiveInternational journal of molecular sciences · 2025
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  8. Prevalence and Variability ofAntibiotics (Basel, Switzerland) · 2025
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  9. Detection ofCurrent issues in molecular biology · 2025
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  13. Genetic Markers ofCurrent issues in molecular biology · 2024
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  16. Editorial: Clinical management ofFrontiers in medicine · 2024
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  18. A Mini-review onEndocrine, metabolic & immune disorders drug targets · 2024
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  19. Strategies ofFrontiers in cellular and infection microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Aalaa Mahgoub AlbashaDepartment of Microbiology, College of Medical Laboratory Sciences, Sudan University for Science and Technology, Khartoum, Sudan. loleta95227@outlook.com.
Maram M ElnoshDepartment of Microbiology, College of Medical Laboratory Sciences, Sudan University for Science and Technology, Khartoum, Sudan.
Esraa Hassan OsmanDepartment of Microbiology, College of Medical Laboratory Sciences, Sudan University for Science and Technology, Khartoum, Sudan.
Duha M ZeinalabdinDepartment of Microbiology, College of Medical Laboratory Sciences, Sudan University for Science and Technology, Khartoum, Sudan.
Amira A M FadlDepartment of Medicine, The National Ribat University, Ribat University Hospital, Khartoum, Sudan.
Musa Abdalla AliDepartment of Microbiology, faculty of Medical Laboratory Science, University of Khartoum, Khartoum, Sudan.
Hisham N AltaybDepartment of Microbiology, College of Medical Laboratory Sciences, Sudan University for Science and Technology, Khartoum, Sudan.
Sudan University of Science and Technology · SDKing Abdulaziz University · SANational Ribat University · SDUniversity of Khartoum · SD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundClarithromycin resistant Helicobacter pylori (H. pylori) strains represent a worldwide health problem. These stains are usually carrying mutations within the 23S rRNA gene associated with clarithromycin resistance. This study aimed to detect H. pylori and clarithromycin resistant associated mutations from Sudanese patients with gastritis symptoms. MATERIALS AND

methodsTwo hundred and eighty-eight gastric biopsies were collected using gastrointestinal endoscopy from patients with gastritis symptoms in different hospitals in Khartoum state. H. pylori was detected by PCR using primer targeting 16S rRNA. Then allele-specific PCR and DNA sequencing were used to screen for the presence of A2142G and A2143G point mutations.

resultsOut of 288 samples, H. pylori was detected in 88 (~ 30.6%) samples by 16 s RNA. Allele-specific PCR detected the variant A2142G in 9/53 (~ 17%) sample, while A2143G mutation was not found in any sample. The DNA sequencing revealed the presence of mutations associated with clarithromycin-resistance in 36% (9/25) of samples; the A2142G was present in one sample, A2143G in 5 samples and T2182C in 4 samples. Additionally, another point mutation (C2195T) was detected in 3 samples. There was no association of 23S rRNA gene point mutations with gender, age group, and patients' geographical distribution.

conclusionThis study revealed a high frequency (36%) of mutations associated with clarithromycin resistance using DNA sequencing of the 23S rRNA gene's V domain. This information should be taken into consideration to avoid eradication therapy failing.

Indexed as

Genes, rRNAPoint MutationAdolescentAdultAnti-Bacterial AgentsClarithromycinDNA, BacterialDrug Resistance, BacterialFemaleHelicobacter InfectionsHelicobacter pyloriHumansMaleMicrobial Sensitivity TestsRNA, Ribosomal, 23SSudanAnti-Bacterial AgentsClarithromycinDNA, BacterialRNA, Ribosomal, 23SA2142GA2143GClarithromycin-resistanceH. pyloriSudan

Identifiers

PMID33535966
PMCPMC7856789
OpenAlexW3126971882

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.