Evidence map›Paper›PMID 33539484›Full record

ReviewPLoS pathogens2021

Three-dimensional chromatin in infectious disease-A role for gene regulation and pathogenicity?

Sage Z Davis, Thomas Hollin, Todd Lenz, Karine G Le Roch

Open access · goldAbstract readReview
In one paragraph

Review in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Modulation of Host Immune Response duringFrontiers in immunology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sage Z DavisDepartment of Molecular, Cell and Systems Biology (MCSB), University of California Riverside, California, United States of America.ORCID 0000-0003-2938-002X
Thomas HollinDepartment of Molecular, Cell and Systems Biology (MCSB), University of California Riverside, California, United States of America.ORCID 0000-0002-8089-3253
Todd LenzDepartment of Molecular, Cell and Systems Biology (MCSB), University of California Riverside, California, United States of America.ORCID 0000-0001-6209-7061
Karine G Le RochDepartment of Molecular, Cell and Systems Biology (MCSB), University of California Riverside, California, United States of America.
University of California, Riverside · US

Funding

Chromatin structure and control of gene expression in the human malaria parasiteR01AI136511 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI LE ROCH, KARINE GAELLE · 2018 to 2022
$3.4M
RAPs-mediated post-transcriptional control in Apicomplexan parasitesR01AI142743 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI LE ROCH, KARINE GAELLE · 2018 to 2022
$2.8M
Evolution of the 3D chromatin structure in apicomplexan parasitesR21AI142506 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI LE ROCH, KARINE GAELLE · 2019 to 2020
$479k
NIAID NIH HHS R01 AI136511NIAID NIH HHS R01 AI142743NIAID NIH HHS R21 AI142506NIH HHS R01 AI142743-01NIH HHS R21 AI142506-01
6 · The paper itself

Abstract

The recent Coronavirus Disease 2019 pandemic has once again reminded us the importance of understanding infectious diseases. One important but understudied area in infectious disease research is the role of nuclear architecture or the physical arrangement of the genome in the nucleus in controlling gene regulation and pathogenicity. Recent advances in research methods, such as Genome-wide chromosome conformation capture using high-throughput sequencing (Hi-C), have allowed for easier analysis of nuclear architecture and chromosomal reorganization in both the infectious disease agents themselves as well as in their host cells. This review will discuss broadly on what is known about nuclear architecture in infectious disease, with an emphasis on chromosomal reorganization, and briefly discuss what steps are required next in the field.

Indexed as

AnimalsCell NucleusChromatinChromosomesCommunicable DiseasesCOVID-19Gene Expression RegulationHumansChromatin

Identifiers

PMID33539484
PMCPMC7861443
OpenAlexW3128840076

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.