Evidence map›Paper›PMID 33554343›Full record

ArticlePlant, cell & environment2021

An amiRNA screen uncovers redundant CBF and ERF34/35 transcription factors that differentially regulate arsenite and cadmium responses.

Qingqing Xie, Qi Yu, Timothy O Jobe, Allis Pham, Chennan Ge, Qianqian Guo, Jianxiu Liu, Honghong Liu, Huijie Zhang, Yunde Zhao and 3 more

Open access · greenAbstract read
In one paragraph

Article in Plant, cell & environment, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

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  10. The TabHLH094-TaMYC8 complex mediates the cadmium response in wheat.Molecular breeding : new strategies in plant improvement · 2023
    Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Qingqing XieDivision of Biological Sciences, Cell and Developmental Biology Section, University of California, San Diego, California, USA.
Qi YuDivision of Biological Sciences, Cell and Developmental Biology Section, University of California, San Diego, California, USA.
Timothy O JobeDivision of Biological Sciences, Cell and Developmental Biology Section, University of California, San Diego, California, USA.ORCID 0000-0002-5729-4981
Allis PhamDivision of Biological Sciences, Cell and Developmental Biology Section, University of California, San Diego, California, USA.
Chennan GeDivision of Biological Sciences, Cell and Developmental Biology Section, University of California, San Diego, California, USA.
Qianqian GuoCollege of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China.
Jianxiu LiuCollege of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China.
Honghong LiuCollege of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China.
Huijie ZhangCollege of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China.
Yunde ZhaoDivision of Biological Sciences, Cell and Developmental Biology Section, University of California, San Diego, California, USA.
Shaowu XueCollege of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China.ORCID 0000-0002-8838-3362
Felix HauserDivision of Biological Sciences, Cell and Developmental Biology Section, University of California, San Diego, California, USA.
Julian I SchroederDivision of Biological Sciences, Cell and Developmental Biology Section, University of California, San Diego, California, USA.ORCID 0000-0002-3283-5972
University of California San Diego · USHuazhong Agricultural University · CNSalk Institute for Biological Studies · USUniversity of Cologne · DE

Funding

Yeast Genetics and Stress Response Genes-BiomedicalP42ES010337 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TUKEY, ROBERT H · 2000 to 2022
$69.8M
NIEHS NIH HHS P42 ES010337NIEHS NIH HHS P42ES010337NIH HHS GM114660
6 · The paper itself

Abstract

Arsenic stress causes rapid transcriptional responses in plants. However, transcriptional regulators of arsenic-induced gene expression in plants remain less well known. To date, forward genetic screens have proven limited for dissecting arsenic response mechanisms. We hypothesized that this may be due to the extensive genetic redundancy present in plant genomes. To overcome this limitation, we pursued a forward genetic screen for arsenite tolerance using a randomized library of plants expressing >2,000 artificial microRNAs (amiRNAs). This library was designed to knock-down diverse combinations of homologous gene family members within sub-clades of transcription factor and transporter gene families. We identified six transformant lines showing an altered response to arsenite in root growth assays. Further characterization of an amiRNA line targeting closely homologous CBF and ERF transcription factors show that the CBF1,2 and 3 transcription factors negatively regulate arsenite sensitivity. Furthermore, the ERF34 and ERF35 transcription factors are required for cadmium resistance. Generation of CRISPR lines, higher-order T-DNA mutants and gene expression analyses, further support our findings. These ERF transcription factors differentially regulate arsenite sensitivity and cadmium tolerance.

Indexed as

Genetic TestingArabidopsisArabidopsis ProteinsArsenitesCadmiumDown-RegulationGene Expression Regulation, PlantMicroRNAsMutationRNA, MessengerTranscription FactorsArabidopsis ProteinsarseniteArsenitesCadmiumMicroRNAsRNA, MessengerTranscription FactorsarsenicERF transcription factorsheavy metalredundancy

Identifiers

PMID33554343
PMCPMC8068611
OpenAlexW3127127689

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.