Evidence map›Paper›PMID 33556646›Full record

ArticleJournal of molecular graphics & modelling2021

Interaction of small molecules with the SARS-CoV-2 papain-like protease: In silico studies and in vitro validation of protease activity inhibition using an enzymatic inhibition assay.

Eleni Pitsillou, Julia Liang, Katherine Ververis, Andrew Hung, Tom C Karagiannis

Open access · greenAbstract readValidation Study
In one paragraph

Article in Journal of molecular graphics & modelling, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Review
  6. Therapeutic potential of green tea catechin, (-)-epigallocatechin-3-Phytomedicine plus : international journal of phytotherapy and phytopharmacology · 2023
    Review
  7. Article
  8. Small molecules in the treatment of COVID-19.Signal transduction and targeted therapy · 2022
    Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Novel Drug Design for Treatment of COVID-19: A Systematic Review of Preclinical Studies.The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2022
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Eleni PitsillouEpigenomic Medicine, Department of Diabetes, Central Clinical School, Monash University, Melbourne, VIC, 3004, Australia; School of Science, College of Science, Engineering & Health, RMIT University, VIC, 3001, Australia.
Julia LiangEpigenomic Medicine, Department of Diabetes, Central Clinical School, Monash University, Melbourne, VIC, 3004, Australia; School of Science, College of Science, Engineering & Health, RMIT University, VIC, 3001, Australia.
Katherine VerverisEpigenomic Medicine, Department of Diabetes, Central Clinical School, Monash University, Melbourne, VIC, 3004, Australia.
Andrew HungSchool of Science, College of Science, Engineering & Health, RMIT University, VIC, 3001, Australia.
Tom C KaragiannisEpigenomic Medicine, Department of Diabetes, Central Clinical School, Monash University, Melbourne, VIC, 3004, Australia; Department of Clinical Pathology, The University of Melbourne, Parkville, VIC, 3052, Australia. Electronic address: tom.karagiannis@monash.edu.
Monash University · AURMIT University · AUThe University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The SARS-CoV-2 virus is causing COVID-19, an ongoing pandemic, with extraordinary global health, social, and political implications. Currently, extensive research and development efforts are aimed at producing a safe and effective vaccine. In the interim, small molecules are being widely investigated for antiviral effects. With respect to viral replication, the papain-like (PL

Indexed as

AnthocyaninsAnthracenesAntiviral AgentsBinding SitesCoronavirus 3C ProteasesCOVID-19COVID-19 Drug TreatmentEnzyme AssaysHumansMolecular Docking SimulationMolecular Dynamics SimulationPeryleneProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein Interaction Domains and Motifs3C-like proteinase, SARS-CoV-2AnthocyaninsAnthracenesAntiviral AgentsCoronavirus 3C Proteasescyanidin-3-O-beta-glucopyranosidehypericinPeryleneRutinSmall Molecule LibrariesCoronavirusCOVID-19Cyanidin-3-O-GlucosideGRL-0617HypericinMolecular dockingMolecular dynamics simulationsPapain-like proteaseRutinSARS-CoV-2

Identifiers

PMID33556646
PMCPMC7837617
OpenAlexW3124573290

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.