Evidence map›Paper›PMID 33571111›Full record

ArticleScience advances2021

Structural basis for heme-dependent NCoR binding to the transcriptional repressor REV-ERBβ.

Sarah A Mosure, Timothy S Strutzenberg, Jinsai Shang, Paola Munoz-Tello, Laura A Solt, Patrick R Griffin, Douglas J Kojetin

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Negative regulation of TbioRxiv : the preprint server for biology · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Update on heme biosynthesis, tissue-specific regulation, heme transport, relation to iron metabolism and cellular energy.Liver international : official journal of the International Association for the Study of the Liver · 2024
    Review
  6. Review
  7. Review
  8. Article
  9. A Chemical Proteomic Map of Heme-Protein Interactions.Journal of the American Chemical Society · 2022
    Article
  10. Regulation of protein function and degradation by heme, heme responsive motifs, and CO.Critical reviews in biochemistry and molecular biology · 2022
    Review
  11. NO rapidly mobilizes cellular heme to trigger assembly of its own receptor.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Article
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Sarah A MosureDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.ORCID 0000-0003-4477-5396
Timothy S StrutzenbergSkaggs Graduate School of Chemical and Biological Sciences, The Scripps Research Institute, Jupiter, FL 33458, USA.ORCID 0000-0003-0598-534X
Jinsai ShangDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.ORCID 0000-0001-8164-1544
Paola Munoz-TelloDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.ORCID 0000-0002-5225-1907
Laura A SoltDepartment of Immunology and Microbiology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Patrick R GriffinDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.ORCID 0000-0002-3404-690X
Douglas J KojetinDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA. dkojetin@scripps.edu.ORCID 0000-0001-8058-6168
Scripps Research Institute · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Identification of REV-ERB inverse agonists for cancer immunotherapyR01CA241816 · NCI · UNIVERSITY OF FLORIDA · PI SOLT, LAURA A · 2019 to 2022
$2.5M
Regulation of TH17 Cell Development and Function by the REV-ERBsR01AI116885 · NIAID · SCRIPPS FLORIDA · PI SOLT, LAURA A · 2016 to 2020
$2.1M
Structural mechanism and function of endogenous ligands targeting orphan NR4A receptorsR01GM114420 · NIGMS · SCRIPPS FLORIDA · PI KOJETIN, DOUGLAS · 2015 to 2018
$1.5M
Integrated Acoustic Transfer System for HTS Library ManagementS10OD025279 · OD · SCRIPPS FLORIDA · PI SCAMPAVIA, LOUIS DANIEL · 2018 to 2018
$624k
HTS Drug  Discovery DispensersS10OD026857 · OD · SCRIPPS FLORIDA · PI SCAMPAVIA, LOUIS DANIEL · 2019 to 2019
$452k
Elucidating the molecular mechanisms underlying ligand-dependent REV-ERB activity in Th17 cellsF31DK127643 · NIDDK · UNIVERSITY OF FLORIDA · PI MOSURE, SARAH · 2021 to 2022
$67k
Determining the structural basis for ligand-mediated RORγ activationF31GM126842 · NIGMS · SCRIPPS FLORIDA · PI STRUTZENBERG, TIMOTHY SILAS · 2017 to 2019
$63k
NCI NIH HHS R01 CA241816NIAID NIH HHS R01 AI116885NIDDK NIH HHS F31 DK127643NIGMS NIH HHS F31 GM126842NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM114420NIH HHS S10 OD025279NIH HHS S10 OD026857
6 · The paper itself

Abstract

Heme is the endogenous ligand for the constitutively repressive REV-ERB nuclear receptors, REV-ERBα (NR1D1) and REV-ERBβ (NR1D2), but how heme regulates REV-ERB activity remains unclear. Cellular studies indicate that heme is required for the REV-ERBs to bind the corepressor NCoR and repress transcription. However, fluorescence-based biochemical assays suggest that heme displaces NCoR; here, we show that this is due to a heme-dependent artifact. Using ITC and NMR spectroscopy, we show that heme binding remodels the thermodynamic interaction profile of NCoR receptor interaction domain (RID) binding to REV-ERBβ ligand-binding domain (LBD). We solved two crystal structures of REV-ERBβ LBD cobound to heme and NCoR peptides, revealing the heme-dependent NCoR binding mode. ITC and chemical cross-linking mass spectrometry reveals a 2:1 LBD:RID stoichiometry, consistent with cellular studies showing that NCoR-dependent repression of REV-ERB transcription occurs on dimeric DNA response elements. Our findings should facilitate renewed progress toward understanding heme-dependent REV-ERB activity.

Identifiers

PMID33571111
PMCPMC7840129
OpenAlexW3123389247

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.