Evidence map›Paper›PMID 33591267›Full record

ArticleeLife2021

An atlas of neural crest lineages along the posterior developing zebrafish at single-cell resolution.

Aubrey Ga Howard, Phillip A Baker, Rodrigo Ibarra-García-Padilla, Joshua A Moore, Lucia J Rivas, James J Tallman, Eileen W Singleton, Jessa L Westheimer, Julia A Corteguera, Rosa A Uribe

Open access · goldAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
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  5. Review
  6. Whole-Gut Spatial Genomic Analysis Reveals Molecular Regionalization of the Differentiating Zebrafish Enteric Nervous System.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  7. Article
  8. Review
  9. Review
  10. Specialized molecular pathways drive the formation of light-scattering assemblies in leucophores.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Spatiotemporal distribution of neural crest cells in the common wall lizard Podarcis muralis.Developmental dynamics : an official publication of the American Association of Anatomists · 2025
    Article
  12. Article
  13. Article
  14. Review
  15. BMP signaling pathway member expression is enriched in enteric neural progenitors and required for zebrafish enteric nervous system development.Developmental dynamics : an official publication of the American Association of Anatomists · 2025
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Aubrey Ga Howard *Department of BioSciences, Rice University, Houston, United States.
Phillip A Baker *Department of BioSciences, Rice University, Houston, United States.
Rodrigo Ibarra-García-PadillaDepartment of BioSciences, Rice University, Houston, United States.
Joshua A MooreDepartment of BioSciences, Rice University, Houston, United States.
Lucia J RivasDepartment of BioSciences, Rice University, Houston, United States.
James J TallmanDepartment of BioSciences, Rice University, Houston, United States.
Eileen W SingletonDepartment of BioSciences, Rice University, Houston, United States.
Jessa L WestheimerDepartment of BioSciences, Rice University, Houston, United States.
Julia A CortegueraDepartment of BioSciences, Rice University, Houston, United States.
Rosa A UribeDepartment of BioSciences, Rice University, Houston, United States.ORCID 0000-0002-0427-4493
Rice University · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DIANE BODURKA · 1985 to 2026
$290.8M
Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Suzanne AW Fuqua · 2007 to 2026
$73.9M
BD Biosciences Special Order LSRIIS10RR024574 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI LUMPKIN, ELLEN A · 2009 to 2009
$430k
Defining the functional role of Bone Morphogenic Protein Signaling Pathway in the formation of the enteric nervous systemF31HD104474 · NICHD · RICE UNIVERSITY · PI MOORE, JOSHUA A · 2020 to 2023
$164k
NCI NIH HHS P30 CA016672NCI NIH HHS P30 CA125123NCRR NIH HHS S10 RR024574NICHD NIH HHS F31 HD104474
6 · The paper itself

Abstract

Neural crest cells (NCCs) are vertebrate stem cells that give rise to various cell types throughout the developing body in early life. Here, we utilized single-cell transcriptomic analyses to delineate NCC-derivatives along the posterior developing vertebrate, zebrafish, during the late embryonic to early larval stage, a period when NCCs are actively differentiating into distinct cellular lineages. We identified several major NCC/NCC-derived cell-types including mesenchyme, neural crest, neural, neuronal, glial, and pigment, from which we resolved over three dozen cellular subtypes. We dissected gene expression signatures of pigment progenitors delineating into chromatophore lineages, mesenchyme cells, and enteric NCCs transforming into enteric neurons. Global analysis of NCC derivatives revealed they were demarcated by combinatorial

Indexed as

Cell LineageAnimalsCell DifferentiationEmbryonic DevelopmentGene Expression Regulation, DevelopmentalLarvaNeural CrestZebrafishdevelopmental biologyentericmelanocyteneural crestneural progenitorsox10transcriptomezebrafish

Identifiers

PMID33591267
PMCPMC7886338
OpenAlexW3132264878

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.