Evidence map›Paper›PMID 33592188›Full record

ReviewCell chemical biology2021

Nuisance compounds in cellular assays.

Jayme L Dahlin, Douglas S Auld, Ina Rothenaigner, Steve Haney, Jonathan Z Sexton, J Willem M Nissink, Jarrod Walsh, Jonathan A Lee, John M Strelow, Francis S Willard and 6 more

Abstract readReview
In one paragraph

Review in Cell chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Antiparasitic Potential of Bioactive Compounds FromJournal of parasitology research · 2026
    Review
  5. Review
  6. Article
  7. Inhibitors of Phosphatidylinositol-specific Phospholipase C wit hMedicinal chemistry (Shariqah (United Arab Emirates)) · 2026
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. The era of high-quality chemical probes.RSC medicinal chemistry · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Jayme L DahlinNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD 20850, USA. Electronic address: dahlinjl@mail.nih.gov.
Douglas S AuldNovartis Institutes for Biomedical Research, Cambridge, MA 02139, USA.
Ina RothenaignerAssay Development and Screening Platform, Helmholtz Zentrum Muenchen, 85764 Neuherberg, Germany.
Steve HaneyIndiana Biosciences Research Institute, Indianapolis, IN 46202, USA.
Jonathan Z SextonDepartment of Internal Medicine, Gastroenterology, Michigan Medicine at the University of Michigan, Ann Arbor, MI 48109, USA.
J Willem M NissinkOncology R&D, AstraZeneca, Cambridge CB4 0WG, UK.
Jarrod WalshHit Discovery, Discovery Sciences, R&D, AstraZeneca, Alderley Park SK10 4TG, UK.
Jonathan A LeePDD4Patients LLC, Indianapolis, IN 46205, USA.
John M StrelowEli Lilly and Company, Indianapolis, IN 46285, USA.
Francis S WillardEli Lilly and Company, Indianapolis, IN 46285, USA.
Lori FerrinsDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, MA 02115, USA.
Jonathan B BaellMedicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, VIC 3052, Australia; School of Pharmaceutical Sciences, Nanjing Tech University, Nanjing 211816, People's Republic of China.
Michael A WaltersInstitute for Therapeutics Discovery and Development, University of Minnesota, Minneapolis, MN 55414, USA.
Bruce K HuaChemical Biology and Therapeutics Science Program, Broad Institute, Cambridge, MA 02140, USA; Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02140, USA.
Kamyar HadianAssay Development and Screening Platform, Helmholtz Zentrum Muenchen, 85764 Neuherberg, Germany.
Bridget K WagnerChemical Biology and Therapeutics Science Program, Broad Institute, Cambridge, MA 02140, USA.

Funding

VASCULAR, PULMONARY AND RENAL INJURYT32HL007627 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI GIMBRONE, MICHAEL A, MITCHELL, RICHARD N · 1985 to 2019
$12.7M
One-compound, one-islet: A high-throughput platform for small-molecule discoveryU01DK123717 · NIDDK · BROAD INSTITUTE, INC. · PI KULKARNI, ROHIT N., WAGNER, BRIDGET K · 2019 to 2022
$3.1M
Opera Phenix high-throughput microplate confocal imager for high-content screeningS10OD026839 · OD · BROAD INSTITUTE, INC. · PI WAGNER, BRIDGET K · 2019 to 2019
$1.0M
Intramural NIH HHS Z99 TR999999NHLBI NIH HHS T32 HL007627NIDDK NIH HHS U01 DK123717NIH HHS S10 OD026839
6 · The paper itself

Abstract

Compounds that exhibit assay interference or undesirable mechanisms of bioactivity ("nuisance compounds") are routinely encountered in cellular assays, including phenotypic and high-content screening assays. Much is known regarding compound-dependent assay interferences in cell-free assays. However, despite the essential role of cellular assays in chemical biology and drug discovery, there is considerably less known about nuisance compounds in more complex cell-based assays. In our view, a major obstacle to realizing the full potential of chemical biology will not just be difficult-to-drug targets or even the sheer number of targets, but rather nuisance compounds, due to their ability to waste significant resources and erode scientific trust. In this review, we summarize our collective academic, government, and industry experiences regarding cellular nuisance compounds. We describe assay design strategies to mitigate the impact of nuisance compounds and suggest best practices to efficiently address these compounds in complex biological settings.

Indexed as

Artificial IntelligenceBiological ProductsCheminformaticsHumansPharmaceutical PreparationsBiological ProductsPharmaceutical Preparationsartifactschemical biologydrug discoveryhigh-content screeninghigh-throughput screeninginterferencenuisance compoundsphenotypic drug discoveryphenotypic screening

Identifiers

PMID33592188
PMCPMC7979533

What Socratic holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.