Evidence map›Paper›PMID 33636437›Full record

ArticleBioorganic chemistry2021

Flavonoids from Pterogyne nitens as Zika virus NS2B-NS3 protease inhibitors.

Caroline Sprengel Lima, Melina Mottin, Leticia Ribeiro de Assis, Nathalya Cristina de Moraes Roso Mesquita, Bruna Katiele de Paula Sousa, Lais Durco Coimbra, Karina Bispo-Dos- Santos, Kimberley M Zorn, Rafael V C Guido, Sean Ekins and 5 more

Open access · greenAbstract read
In one paragraph

Article in Bioorganic chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Article
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  4. Review
  5. Antioxidant activities of thermally treatedFood science and biotechnology · 2023
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Advancement in the Development of Therapeutics Against Zika Virus Infection.Frontiers in cellular and infection microbiology · 2022
    Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Caroline Sprengel LimaLaboratory of Antibiotics and Chemotherapeutics (LAQ), Institute of Biosciences, Humanities and Exact Sciences, São Paulo State University (Unesp), São José do Rio Preto, SP, Brazil.
Melina MottinLaboratory of Molecular Modeling and Drug Design (LabMol), Faculdade de Farmácia, Universidade Federal de Goiás, Goiânia, GO, Brazil.
Leticia Ribeiro de AssisLaboratory of Antibiotics and Chemotherapeutics (LAQ), Institute of Biosciences, Humanities and Exact Sciences, São Paulo State University (Unesp), São José do Rio Preto, SP, Brazil.
Nathalya Cristina de Moraes Roso MesquitaInstitute of Physics of São Carlos, University of São Paulo, São Carlos, SP, Brazil.
Bruna Katiele de Paula SousaLaboratory of Molecular Modeling and Drug Design (LabMol), Faculdade de Farmácia, Universidade Federal de Goiás, Goiânia, GO, Brazil.
Lais Durco CoimbraBrazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, SP, Brazil.
Karina Bispo-Dos- SantosLaboratory of Emerging Viruses (LEVE), Department of Genetics, Evolution, Microbiology and Immunology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil.
Kimberley M ZornCollaborations Pharmaceuticals, Inc., Raleigh, NC, United States.
Rafael V C GuidoInstitute of Physics of São Carlos, University of São Paulo, São Carlos, SP, Brazil.
Sean EkinsCollaborations Pharmaceuticals, Inc., Raleigh, NC, United States.
Rafael Elias MarquesBrazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, SP, Brazil.
José Luiz Proença-ModenaLaboratory of Emerging Viruses (LEVE), Department of Genetics, Evolution, Microbiology and Immunology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil.
Glaucius OlivaInstitute of Physics of São Carlos, University of São Paulo, São Carlos, SP, Brazil.
Carolina Horta AndradeLaboratory of Molecular Modeling and Drug Design (LabMol), Faculdade de Farmácia, Universidade Federal de Goiás, Goiânia, GO, Brazil. Electronic address: carolina@ufg.br.
Luis Octavio RegasiniLaboratory of Antibiotics and Chemotherapeutics (LAQ), Institute of Biosciences, Humanities and Exact Sciences, São Paulo State University (Unesp), São José do Rio Preto, SP, Brazil. Electronic address: luis.regasini@unesp.br.
Universidade de São Paulo · BRUniversidade Estadual Paulista (Unesp) · BRUniversidade Federal de Goiás · BRBrazilian Center for Research in Energy and Materials · BRCollaborations Pharmaceuticals (United States) · USUniversidade Estadual de Campinas (UNICAMP) · BR

Funding

Centralized assay datasets for modelling support of small drug discovery organizationsR44GM122196 · NIGMS · COLLABORATIONS PHARMACEUTICALS, INC. · PI EKINS, SEAN · 2018 to 2022
$3.3M
MegaPredict for predicting natural product uses and their drug interactionsR43AT010585 · NCCIH · COLLABORATIONS PHARMACEUTICALS, INC. · PI EKINS, SEAN · 2019 to 2020
$225k
Centralized assay datasets for modelling support of small drug discovery organizationsR43GM122196 · NIGMS · COLLABORATIONS PHARMACEUTICALS, INC. · PI EKINS, SEAN · 2017 to 2017
$150k
NCCIH NIH HHS R43 AT010585NIGMS NIH HHS R43 GM122196NIGMS NIH HHS R44 GM122196
6 · The paper itself

Abstract

Although the widespread epidemic of Zika virus (ZIKV) and its neurological complications are well-known there are still no approved drugs available to treat this arboviral disease or vaccine to prevent the infection. Flavonoids from Pterogyne nitens have already demonstrated anti-flavivirus activity, although their target is unknown. In this study, we virtually screened an in-house database of 150 natural and semi-synthetic compounds against ZIKV NS2B-NS3 protease (NS2B-NS3p) using docking-based virtual screening, as part of the OpenZika project. As a result, we prioritized three flavonoids from P. nitens, quercetin, rutin and pedalitin, for experimental evaluation. We also used machine learning models, built with Assay Central® software, for predicting the activity and toxicity of these flavonoids. Biophysical and enzymatic assays generally agreed with the in silico predictions, confirming that the flavonoids inhibited ZIKV protease. The most promising hit, pedalitin, inhibited ZIKV NS2B-NS3p with an IC

Indexed as

AnimalsAntiviral AgentsCell SurvivalChlorocebus aethiopsDEAD-box RNA HelicasesEnzyme InhibitorsFlavonesMachine LearningModels, MolecularMolecular Docking SimulationNucleoside-TriphosphataseProtein ConformationQuercetinRutinSerine EndopeptidasesVero CellsAntiviral AgentsDEAD-box RNA HelicasesEnzyme InhibitorsFlavonesNS2B protein, flavivirusNS3 protein, Zika virusNucleoside-TriphosphatasepedalitinQuercetinRutinSerine EndopeptidasesViral Nonstructural ProteinsViral ProteasesViral ProteinsAntiviralDrug discoveryEmerging arbovirusesEnzyme inhibitorsFlavonoidNS3 proteinProteasePterogyne nitensVirtual screeningZika virus

Identifiers

PMID33636437
PMCPMC8227833
OpenAlexW3131780971

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.