Evidence map›Paper›PMID 33647016›Full record

ArticlePLoS computational biology2021

Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cells.

Jared Brown, Christopher Barry, Matthew T Schmitz, Cara Argus, Jennifer M Bolin, Michael P Schwartz, Amy Van Aartsen, John Steill, Scott Swanson, Ron Stewart and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. The making of cells and organs in xenogeneic animal bioreactor.Signal transduction and targeted therapy · 2026
    Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. The stem cell zoo for comparative studies of developmental tempo.Current opinion in genetics & development · 2024
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Cross-species comparisons andInterface focus · 2021
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Jared BrownDepartment of Statistics, University of Wisconsin-Madison, Wisconsin, United States of America.ORCID 0000-0002-9151-4386
Christopher BarryMorgridge Institute for Research, Madison, Wisconsin, United States of America.ORCID 0000-0002-5413-5918
Matthew T SchmitzMorgridge Institute for Research, Madison, Wisconsin, United States of America.ORCID 0000-0002-6177-8161
Cara ArgusMorgridge Institute for Research, Madison, Wisconsin, United States of America.ORCID 0000-0002-7584-5062
Jennifer M BolinMorgridge Institute for Research, Madison, Wisconsin, United States of America.ORCID 0000-0002-2502-6982
Michael P SchwartzNSF Center for Sustainable Nanotechnology, Department of Chemistry, University of Wisconsin-Madison, Wisconsin, United States of America.ORCID 0000-0003-3785-6606
Amy Van AartsenMorgridge Institute for Research, Madison, Wisconsin, United States of America.ORCID 0000-0001-6337-6812
John SteillMorgridge Institute for Research, Madison, Wisconsin, United States of America.ORCID 0000-0003-2994-3400
Scott SwansonMorgridge Institute for Research, Madison, Wisconsin, United States of America.ORCID 0000-0002-3314-0515
Ron StewartMorgridge Institute for Research, Madison, Wisconsin, United States of America.
James A ThomsonMorgridge Institute for Research, Madison, Wisconsin, United States of America.
Christina KendziorskiDepartment of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Wisconsin, United States of America.
Morgridge Institute for Research · USUniversity of Wisconsin–Madison · US

Funding

Statistical methods for spatial RNA sequencing experimentsR01GM102756 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KENDZIORSKI, CHRISTINA · 2012 to 2024
$3.8M
Human iPS/ES Cell-Based Models for Predictive Neural Toxicity and TeratogenicityUH2TR000506 · NCATS · MORGRIDGE INSTITUTE FOR RESEARCH, INC. · PI THOMSON, JAMES ALEXANDER · 2012 to 2013
$2.4M
Bio-Data Science Training ProgramT32LM012413 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI DEWEY, COLIN NOEL, GOULD, MICHAEL N · 2016 to 2020
$1.5M
CIHR BPF-112938NCATS NIH HHS UH2 TR000506NIGMS NIH HHS R01 GM102756NLM NIH HHS T32 LM012413
6 · The paper itself

Abstract

Human pluripotent stem cells hold significant promise for regenerative medicine. However, long differentiation protocols and immature characteristics of stem cell-derived cell types remain challenges to the development of many therapeutic applications. In contrast to the slow differentiation of human stem cells in vitro that mirrors a nine-month gestation period, mouse stem cells develop according to a much faster three-week gestation timeline. Here, we tested if co-differentiation with mouse pluripotent stem cells could accelerate the differentiation speed of human embryonic stem cells. Following a six-week RNA-sequencing time course of neural differentiation, we identified 929 human genes that were upregulated earlier and 535 genes that exhibited earlier peaked expression profiles in chimeric cell cultures than in human cell cultures alone. Genes with accelerated upregulation were significantly enriched in Gene Ontology terms associated with neurogenesis, neuron differentiation and maturation, and synapse signaling. Moreover, chimeric mixed samples correlated with in utero human embryonic samples earlier than human cells alone, and acceleration was dose-dependent on human-mouse co-culture ratios. The altered gene expression patterns and developmental rates described in this report have implications for accelerating human stem cell differentiation and the use of interspecies chimeric embryos in developing human organs for transplantation.

Indexed as

ChimerismHuman Embryonic Stem CellsNeurogenesisPluripotent Stem CellsAnimalsCells, CulturedComputational BiologyHumansMiceSpecies SpecificityTranscriptome

Identifiers

PMID33647016
PMCPMC7951976
OpenAlexW3135607019

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.