Evidence map›Paper›PMID 33648459›Full record

ArticleBMC genomics2021

Transcriptome profiling of Lymnaea stagnalis (Gastropoda) for ecoimmunological research.

Otto Seppälä, Jean-Claude Walser, Teo Cereghetti, Katri Seppälä, Tiina Salo, Coen M Adema

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 35 citations in OpenAlex.

  1. Diversity of Toll-like Receptor Gene Transcripts in Hemocytes of Planorbarius corneus Mollusks (Gastropoda, Pulmonata) Uninfected and Infected with Bilharziella polonica.Doklady biological sciences : proceedings of the Academy of Sciences of the USSR, Biological sciences sections · 2025
    Article
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  3. Molecular Insights into the Marine GastropodInternational journal of molecular sciences · 2025
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  12. Examining adaptive evolution of immune activity: opportunities provided by gastropods in the age of 'omics'.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 5 countries.

Otto SeppäläInstitute of Integrative Biology (IBZ), ETH Zürich, 8092, Zürich, Switzerland. otto.seppaelae@env.ethz.ch.ORCID http://orcid.org/0000-0001-7902-3069
Jean-Claude WalserGenetic Diversity Centre (GDC), ETH Zürich, 8092, Zürich, Switzerland.
Teo CereghettiInstitute of Integrative Biology (IBZ), ETH Zürich, 8092, Zürich, Switzerland.
Katri SeppäläEawag, Swiss Federal Institute of Aquatic Science and Technology, 8600, Dübendorf, Switzerland.
Tiina SaloInstitute of Integrative Biology (IBZ), ETH Zürich, 8092, Zürich, Switzerland.
Coen M AdemaCenter for Evolutionary and Theoretical Immunology, Department of Biology, The University of New Mexico, Albuquerque, NM, 87131, USA.
ETH Zurich · CHÅbo Akademi University · FIUniversität Innsbruck · ATUniversity of New Mexico · US

Funding

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung 31003A 169531
6 · The paper itself

Abstract

backgroundHost immune function can contribute to numerous ecological/evolutionary processes. Ecoimmunological studies, however, typically use one/few phenotypic immune assays and thus do not consider the complexity of the immune system. Therefore, "omics" resources that allow quantifying immune activity across multiple pathways are needed for ecoimmunological models. We applied short-read based RNAseq (Illumina NextSeq 500, PE-81) to characterise transcriptome profiles of Lymnaea stagnalis (Gastropoda), a multipurpose model snail species. We used a genetically diverse snail stock and exposed individuals to immune elicitors (injury, bacterial/trematode pathogens) and changes in environmental conditions that can alter immune activity (temperature, food availability).

resultsImmune defence factors identified in the de novo assembly covered elements broadly described in other gastropods. For instance, pathogen-recognition receptors (PRR) and lectins activate Toll-like receptor (TLR) pathway and cytokines that regulate cellular and humoral defences. Surprisingly, only modest diversity of antimicrobial peptides and fibrinogen related proteins were detected when compared with other taxa. Additionally, multiple defence factors that may contribute to the phenotypic immune assays used to quantify antibacterial activity and phenoloxidase (PO)/melanisation-type reaction in this species were found. Experimental treatments revealed factors from non-self recognition (lectins) and signalling (TLR pathway, cytokines) to effectors (e.g., antibacterial proteins, PO enzymes) whose transcription depended on immune stimuli and environmental conditions, as well as components of snail physiology/metabolism that may drive these effects. Interestingly, the transcription of many factors (e.g., PRR, lectins, cytokines, PO enzymes, antibacterial proteins) showed high among-individual variation.

conclusionsOur results indicate several uniform aspects of gastropod immunity, but also apparent differences between L. stagnalis and some previously examined taxa. Interestingly, in addition to immune defence factors that responded to immune elicitors and changes in environmental conditions, many factors showed high among-individual variation across experimental snails. We propose that such factors are highly important to be included in future ecoimmunological studies because they may be the key determinants of differences in parasite resistance among individuals both within and between natural snail populations.

Indexed as

Gene Expression ProfilingLymnaeaTranscriptomeAnimalsBiological EvolutionMonophenol MonooxygenaseMonophenol MonooxygenaseEcological immunologyGreat pond snailMollusc

Identifiers

PMID33648459
PMCPMC7919325
OpenAlexW3135660044

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.