Evidence map›Paper›PMID 33654100›Full record

ArticleNature communications2021

Complete biosynthesis of a sulfated chondroitin in Escherichia coli.

Abinaya Badri, Asher Williams, Adeola Awofiranye, Payel Datta, Ke Xia, Wenqin He, Keith Fraser, Jonathan S Dordick, Robert J Linhardt, Mattheos A G Koffas

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
6.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 82 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
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  5. Article
  6. Review
  7. EstablishingBiodesign research · 2026
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Reprogramming Metabolic Flux in Escherichia Coli to Enhance Chondroitin Production.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  15. Article
  16. Article
  17. Heterologous production of chondroitin.Biotechnology reports (Amsterdam, Netherlands) · 2022
    Review
  18. Frontiers in microbiology · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Abinaya BadriDepartment of Chemical and Biological Engineering, Rensselaer Polytechnic Institute, Troy, NY, USA.
Asher WilliamsDepartment of Chemical and Biological Engineering, Rensselaer Polytechnic Institute, Troy, NY, USA.
Adeola AwofiranyeDepartment of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY, USA.
Payel DattaDepartment of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY, USA.ORCID 0000-0001-5977-448X
Ke XiaDepartment of Chemical and Biological Engineering, Rensselaer Polytechnic Institute, Troy, NY, USA.
Wenqin HeDepartment of Chemical and Biological Engineering, Rensselaer Polytechnic Institute, Troy, NY, USA.
Keith FraserDepartment of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY, USA.
Jonathan S DordickDepartment of Chemical and Biological Engineering, Rensselaer Polytechnic Institute, Troy, NY, USA.ORCID 0000-0001-7802-3702
Robert J LinhardtDepartment of Chemical and Biological Engineering, Rensselaer Polytechnic Institute, Troy, NY, USA.ORCID 0000-0003-2219-5833
Mattheos A G KoffasDepartment of Chemical and Biological Engineering, Rensselaer Polytechnic Institute, Troy, NY, USA. koffam@rpi.edu.ORCID 0000-0002-1405-0565
Rensselaer Polytechnic Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sulfated glycosaminoglycans (GAGs) are a class of important biologics that are currently manufactured by extraction from animal tissues. Although such methods are unsustainable and prone to contamination, animal-free production methods have not emerged as competitive alternatives due to complexities in scale-up, requirement for multiple stages and cost of co-factors and purification. Here, we demonstrate the development of single microbial cell factories capable of complete, one-step biosynthesis of chondroitin sulfate (CS), a type of GAG. We engineer E. coli to produce all three required components for CS production-chondroitin, sulfate donor and sulfotransferase. In this way, we achieve intracellular CS production of ~27 μg/g dry-cell-weight with about 96% of the disaccharides sulfated. We further explore four different factors that can affect the sulfation levels of this microbial product. Overall, this is a demonstration of simple, one-step microbial production of a sulfated GAG and marks an important step in the animal-free production of these molecules.

Indexed as

Biosynthetic PathwaysBiological TransportChondroitin SulfatesEscherichia coliFermentationOxidoreductasesSulfotransferases3'-phosphoadenylyl-5'-phosphosulfate reductaseChondroitin SulfatesOxidoreductasesSulfotransferases

Identifiers

PMID33654100
PMCPMC7925653
OpenAlexW3134420050

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.