Evidence map›Paper›PMID 33658279›Full record

ArticlemSphere2021

Whole-Genome Enrichment and Sequencing of Chlamydia trachomatis Directly from Patient Clinical Vaginal and Rectal Swabs.

Katherine E Bowden, Sandeep J Joseph, John C Cartee, Noa Ziklo, Damien Danavall, Brian H Raphael, Timothy D Read, Deborah Dean

Open access · goldAbstract read
In one paragraph

Article in mSphere, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Current status and future directions ofFrontiers in veterinary science · 2026
    Pooled it
  2. Article
  3. Review
  4. Resistome and virulome determination inMicrobiology spectrum · 2025
    Article
  5. Whole-genome automated assembly pipeline forNAR genomics and bioinformatics · 2025
    Article
  6. Article
  7. Microbial genomics · 2025
    Article
  8. StrengtheningJournal of clinical microbiology · 2024
    Article
  9. Article
  10. Patterns of within-host spread ofbioRxiv : the preprint server for biology · 2023
    Article
  11. Patterns of within-host spread ofFrontiers in microbiology · 2023
    Article
  12. Genome organization and genomics inFrontiers in cellular and infection microbiology · 2023
    Review
  13. Article
  14. Article
  15. Article
  16. The role of tryptophan inFrontiers in cellular and infection microbiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Katherine E BowdenDivision of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA KBowden@cdc.gov.ORCID 0000-0002-7877-8205
Sandeep J JosephDivision of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
John C CarteeDivision of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Noa ZikloUniversity of California San Francisco Benioff Children's Hospital Oakland Research Institute, Oakland, California, USA.
Damien DanavallDivision of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Brian H RaphaelDivision of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Timothy D ReadEmory University School of Medicine, Atlanta, Georgia, USA.ORCID 0000-0001-8966-9680
Deborah DeanUniversity of California San Francisco School of Medicine, San Francisco, California, USA.ORCID 0000-0002-4490-1746
Centers for Disease Control and Prevention · USUniversity of California, San Francisco · USEmory University · US

Funding

C. trachomatis within-host genomic diversity and transmission between female anatomic sitesR21AI138079 · NIAID · EMORY UNIVERSITY · PI DEAN, DEBORAH ANNE, READ, TIMOTHY D. · 2019 to 2020
$469k
NIAID NIH HHS R21 AI138079
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Genome, BacterialWhole Genome SequencingAdolescentAdultChlamydia InfectionsChlamydia trachomatisFemaleHumansPhylogenyRectumVaginaYoung AdultChlamydia trachomatisrecombinationSNPswhole-genome enrichment

Identifiers

PMID33658279
PMCPMC8546720
OpenAlexW3134041183

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.