Evidence map›Paper›PMID 33658318›Full record

ArticleLife science alliance2021

Kalirin-RAC controls nucleokinetic migration in ADRN-type neuroblastoma.

Elena A Afanasyeva, Moritz Gartlgruber, Tatsiana Ryl, Bieke Decaesteker, Geertrui Denecker, Gregor Mönke, Umut H Toprak, Andres Florez, Alica Torkov, Daniel Dreidax and 8 more

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 5 countries.

Elena A AfanasyevaDepartment of Neuroblastoma Genomics, Hopp-Children's Cancer Center at the (NCT) Nationales Centrum für Tumorerkrankungen Heidelberg (KiTZ), Heidelberg, Germany elena.afanasyeva@alumni.dkfz.de.ORCID 0000-0001-5294-7130
Moritz GartlgruberDepartment of Neuroblastoma Genomics, Hopp-Children's Cancer Center at the (NCT) Nationales Centrum für Tumorerkrankungen Heidelberg (KiTZ), Heidelberg, Germany.
Tatsiana RylDepartment of Neurosurgery, University of Duisburg Essen, Essen, Germany.
Bieke DecaestekerCenter for Medical Genetics, Ghent University, and Cancer Research Institute Ghent, Ghent, Belgium.ORCID 0000-0003-2264-781X
Geertrui DeneckerCenter for Medical Genetics, Ghent University, and Cancer Research Institute Ghent, Ghent, Belgium.
Gregor MönkeEuropean Molecular Biology Laboratories, Heidelberg, Germany.
Umut H ToprakDepartment of Neuroblastoma Genomics, Hopp-Children's Cancer Center at the (NCT) Nationales Centrum für Tumorerkrankungen Heidelberg (KiTZ), Heidelberg, Germany.
Andres FlorezDepartment of Neuroblastoma Genomics, Hopp-Children's Cancer Center at the (NCT) Nationales Centrum für Tumorerkrankungen Heidelberg (KiTZ), Heidelberg, Germany.ORCID 0000-0002-3063-0578
Alica TorkovDepartment of Neuroblastoma Genomics, Hopp-Children's Cancer Center at the (NCT) Nationales Centrum für Tumorerkrankungen Heidelberg (KiTZ), Heidelberg, Germany.
Daniel DreidaxDepartment of Neuroblastoma Genomics, Hopp-Children's Cancer Center at the (NCT) Nationales Centrum für Tumorerkrankungen Heidelberg (KiTZ), Heidelberg, Germany.
Carl HerrmannGroup of Cancer Regulatory Genomics B086, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Konstantin OkonechnikovDepartment of Pediatric Neurooncology, Hopp-Children's Cancer Center at the (NCT) Nationales Centrum für Tumorerkrankungen Heidelberg (KiTZ), Heidelberg, Germany.
Sara EkDepartment of Immunotechnology, CREATE Health, Faculty of Engineering, Lund University, Lund, Sweden.
Ashwini Kumar SharmaInstitute for Pharmacy and Molecular Biotechnology and BioQuant, Heidelberg University, Heidelberg, Germany.
Vitaliya SagulenkoSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Australia.ORCID 0000-0002-9075-6025
Frank SpelemanCenter for Medical Genetics, Ghent University, and Cancer Research Institute Ghent, Ghent, Belgium.
Kai-Oliver HenrichDepartment of Neuroblastoma Genomics, Hopp-Children's Cancer Center at the (NCT) Nationales Centrum für Tumorerkrankungen Heidelberg (KiTZ), Heidelberg, Germany.
Frank WestermannDepartment of Neuroblastoma Genomics, Hopp-Children's Cancer Center at the (NCT) Nationales Centrum für Tumorerkrankungen Heidelberg (KiTZ), Heidelberg, Germany f.westermann@dkfz.de.ORCID 0000-0003-1584-3636
National Center for Tumor Diseases · DEGhent University · BEGerman Cancer Research Center · DEEuropean Molecular Biology Laboratory · DEHarvard University · USLund University · SEThe University of Queensland · AUUniversity of Duisburg-Essen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The migrational propensity of neuroblastoma is affected by cell identity, but the mechanisms behind the divergence remain unknown. Using RNAi and time-lapse imaging, we show that ADRN-type NB cells exhibit RAC1- and kalirin-dependent nucleokinetic (NUC) migration that relies on several integral components of neuronal migration. Inhibition of NUC migration by RAC1 and kalirin-GEF1 inhibitors occurs without hampering cell proliferation and ADRN identity. Using three clinically relevant expression dichotomies, we reveal that most of up-regulated mRNAs in RAC1- and kalirin-GEF1-suppressed ADRN-type NB cells are associated with low-risk characteristics. The computational analysis shows that, in a context of overall gene set poverty, the upregulomes in RAC1- and kalirin-GEF1-suppressed ADRN-type cells are a batch of AU-rich element-containing mRNAs, which suggests a link between NUC migration and mRNA stability. Gene set enrichment analysis-based search for vulnerabilities reveals prospective weak points in RAC1- and kalirin-GEF1-suppressed ADRN-type NB cells, including activities of H3K27- and DNA methyltransferases. Altogether, these data support the introduction of NUC inhibitors into cancer treatment research.

Indexed as

Adrenergic NeuronsCell Line, TumorCell MovementCells, CulturedChild, PreschoolDatabases, GeneticFemaleGuanine Nucleotide Exchange FactorsHumansMaleNeuroblastomaProspective StudiesProtein Serine-Threonine Kinasesrac1 GTP-Binding ProteinGuanine Nucleotide Exchange FactorsKALRN protein, humanProtein Serine-Threonine Kinasesrac1 GTP-Binding ProteinRAC1 protein, human

Identifiers

PMID33658318
PMCPMC8017594
OpenAlexW3133592134

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.