Evidence map›Paper›PMID 33755016›Full record

ArticleeLife2021

Time-resolved phosphoproteomics reveals scaffolding and catalysis-responsive patterns of SHP2-dependent signaling.

Vidyasiri Vemulapalli, Lily A Chylek, Alison Erickson, Anamarija Pfeiffer, Khal-Hentz Gabriel, Jonathan LaRochelle, Kartik Subramanian, Ruili Cao, Kimberley Stegmaier, Morvarid Mohseni and 5 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
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  9. The C-type lectin receptor Dcir (Frontiers in immunology · 2025
    Article
  10. Article
  11. Review
  12. The pathogenic T42A mutation in SHP2 rewires the interaction specificity of its N-terminal regulatory domain.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Complex Roles ofAnnual review of cancer biology · 2024
    Article
  14. SHP2 regulates GluA2 tyrosine phosphorylation required for AMPA receptor endocytosis and mGluR-LTD.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Phosphoproteomics data-driven signalling network inference: Does it work?Computational and structural biotechnology journal · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Vidyasiri VemulapalliDepartment of Cancer Biology, Dana-Farber Cancer Institute Boston, Boston, United States.ORCID 0000-0002-3368-4766
Lily A ChylekLaboratory of Systems Pharmacology, Harvard Medical School, Boston, United States.ORCID 0000-0003-1216-1250
Alison EricksonDepartment of Cell Biology, Harvard Medical School, Boston, United States.
Anamarija PfeifferNovo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, Denmark.
Khal-Hentz GabrielDepartment of Cancer Biology, Dana-Farber Cancer Institute Boston, Boston, United States.
Jonathan LaRochelleDepartment of Cancer Biology, Dana-Farber Cancer Institute Boston, Boston, United States.
Kartik SubramanianLaboratory of Systems Pharmacology, Harvard Medical School, Boston, United States.ORCID 0000-0002-6900-8882
Ruili CaoDepartment of Cancer Biology, Dana-Farber Cancer Institute Boston, Boston, United States.
Kimberley StegmaierDepartment of Pediatric Oncology, Dana Farber Cancer Institute, Boston, United States.
Morvarid MohseniNovartis Institutes for Biomedical Research, Cambridge, United States.
Matthew J LaMarcheNovartis Institutes for Biomedical Research, Cambridge, United States.
Michael G AckerNovartis Institutes for Biomedical Research, Cambridge, United States.
Peter K SorgerLaboratory of Systems Pharmacology, Harvard Medical School, Boston, United States.ORCID 0000-0002-3364-1838
Steven P GygiDepartment of Cell Biology, Harvard Medical School, Boston, United States.
Stephen C BlacklowDepartment of Cancer Biology, Dana-Farber Cancer Institute Boston, Boston, United States.ORCID 0000-0002-6904-1981
Harvard University · USNovartis (United States) · USDana-Farber Cancer Institute · USUniversity of Copenhagen · DK

Funding

Pharmaco Response Signatures and Disease MechanismU54HL127365 · NHLBI · HARVARD MEDICAL SCHOOL · PI SORGER, PETER KARL · 2014 to 2019
$13.1M
Systems Pharmacology of Therapeutic and Adverse Responses to ImmuneCheckpoint and Small Molecule DrugsU54CA225088 · NCI · HARVARD MEDICAL SCHOOL · PI HAIGIS, MARCIA · 2018 to 2022
$10.8M
Notch Signaling in CancerR35CA220340 · NCI · HARVARD MEDICAL SCHOOL · PI BLACKLOW, STEPHEN C. · 2017 to 2023
$7.1M
NCI NIH HHS R35 CA220340NCI NIH HHS U54 CA225088NHLBI NIH HHS U54 HL127365Novo Nordisk Foundation NNF16CC0020906
6 · The paper itself

Abstract

SHP2 is a protein tyrosine phosphatase that normally potentiates intracellular signaling by growth factors, antigen receptors, and some cytokines, yet is frequently mutated in human cancer. Here, we examine the role of SHP2 in the responses of breast cancer cells to EGF by monitoring phosphoproteome dynamics when SHP2 is allosterically inhibited by SHP099. The dynamics of phosphotyrosine abundance at more than 400 tyrosine residues reveal six distinct response signatures following SHP099 treatment and washout. Remarkably, in addition to newly identified substrate sites on proteins such as occludin, ARHGAP35, and PLCγ2, another class of sites shows reduced phosphotyrosine abundance upon SHP2 inhibition. Sites of decreased phospho-abundance are enriched on proteins with two nearby phosphotyrosine residues, which can be directly protected from dephosphorylation by the paired SH2 domains of SHP2 itself. These findings highlight the distinct roles of the scaffolding and catalytic activities of SHP2 in effecting a transmembrane signaling response.

Indexed as

CatalysisCell Line, TumorEpidermal Growth FactorErbB ReceptorsGuanine Nucleotide Exchange FactorsHumansOccludinPhospholipase C gammaPhosphoproteinsPhosphorylationPhosphotyrosinePiperidinesProtein BindingProtein Tyrosine Phosphatase, Non-Receptor Type 11ProteomicsPyrimidinesARHGAP35 protein, humanEpidermal Growth FactorErbB ReceptorsGuanine Nucleotide Exchange FactorsOccludinPhospholipase C gammaPhosphoproteinsPhosphotyrosinePiperidinesProtein Tyrosine Phosphatase, Non-Receptor Type 11PyrimidinesRepressor ProteinsSHP099biochemistrychemical biologyepidermal growth factor receptorhumanmass spectrometryphosphatasePTPN11signal transduction

Identifiers

PMID33755016
PMCPMC8024022
OpenAlexW3138124819

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.