Evidence map›Paper›PMID 33793815›Full record

ArticleThe Plant cell2021

H3.1K27me1 maintains transcriptional silencing and genome stability by preventing GCN5-mediated histone acetylation.

Jie Dong, Chantal LeBlanc, Axel Poulet, Benoit Mermaz, Gonzalo Villarino, Kimberly M Webb, Valentin Joly, Josefina Mendez, Philipp Voigt, Yannick Jacob

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Epigenetics in the modern era of crop improvements.Science China. Life sciences · 2025
    Review
  6. DDM1 Maintains Heterochromatin by Regulating Histone Variants.International journal of molecular sciences · 2025
    Review
  7. Review
  8. Article
  9. Article
  10. Heterochromatin in plant meiosis.Nucleus (Austin, Tex.) · 2024
    Review
  11. Review
  12. Article
  13. Genomic consequences associated with Agrobacterium-mediated transformation of plants.The Plant journal : for cell and molecular biology · 2024
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Jie DongYale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, 260 Whitney Avenue, New Haven, CN 06511.ORCID 0000-0003-0493-1665
Chantal LeBlancYale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, 260 Whitney Avenue, New Haven, CN 06511.ORCID 0000-0003-1173-3579
Axel PouletYale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, 260 Whitney Avenue, New Haven, CN 06511.ORCID 0000-0002-3415-8960
Benoit MermazYale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, 260 Whitney Avenue, New Haven, CN 06511.ORCID 0000-0002-2573-4401
Gonzalo VillarinoYale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, 260 Whitney Avenue, New Haven, CN 06511.ORCID 0000-0003-2832-6785
Kimberly M WebbWellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF.ORCID 0000-0002-1908-1272
Valentin JolyYale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, 260 Whitney Avenue, New Haven, CN 06511.ORCID 0000-0001-9357-764X
Josefina MendezYale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, 260 Whitney Avenue, New Haven, CN 06511.ORCID 0000-0001-8353-905X
Philipp VoigtWellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF.ORCID 0000-0003-4366-0490
Yannick JacobYale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, 260 Whitney Avenue, New Haven, CN 06511.ORCID 0000-0003-4741-0755
Whitney Museum of American Art · USWellcome Centre for Cell Biology · GB

Funding

Understanding the roles of histone H3 variants in promoting genomic and epigenomic stability during DNA replication and agingR35GM128661 · NIGMS · YALE UNIVERSITY · PI YANNICK JACOB · 2018 to 2026
$4.0M
NIGMS NIH HHS R35 GM128661Wellcome Trust 101527/Z/13/ZWellcome Trust 104175/Z/14/ZWellcome Trust 203149
6 · The paper itself

Abstract

Epigenetic mechanisms play diverse roles in the regulation of genome stability in eukaryotes. In Arabidopsis thaliana, genome stability is maintained during DNA replication by the H3.1K27 methyltransferases ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (ATXR5) and ATXR6, which catalyze the deposition of K27me1 on replication-dependent H3.1 variants. The loss of H3.1K27me1 in atxr5 atxr6 double mutants leads to heterochromatin defects, including transcriptional de-repression and genomic instability, but the molecular mechanisms involved remain largely unknown. In this study, we identified the transcriptional co-activator and conserved histone acetyltransferase GCN5 as a mediator of transcriptional de-repression and genomic instability in the absence of H3.1K27me1. GCN5 is part of a SAGA-like complex in plants that requires the GCN5-interacting protein ADA2b and the chromatin remodeler CHR6 to mediate the heterochromatic defects in atxr5 atxr6 mutants. Our results also indicate that Arabidopsis GCN5 acetylates multiple lysine residues on H3.1 variants, but H3.1K27 and H3.1K36 play essential functions in inducing genomic instability in the absence of H3.1K27me1. Finally, we show that H3.1K36 acetylation by GCN5 is negatively regulated by H3.1K27me1 in vitro. Overall, this work reveals a key molecular role for H3.1K27me1 in maintaining transcriptional silencing and genome stability in heterochromatin by restricting GCN5-mediated histone acetylation in plants.

Indexed as

Genomic InstabilityAcetylationArabidopsisArabidopsis ProteinsGene SilencingGenome, PlantHeterochromatinHistone AcetyltransferasesHistonesLysineMethylationMethyltransferasesMutationp300-CBP-Associated FactorPlants, Genetically ModifiedTranscription FactorsADA2b protein, ArabidopsisArabidopsis ProteinsATXR5 protein, ArabidopsisATXR6 protein, ArabidopsisGCN5 protein, ArabidopsisHeterochromatinHistone AcetyltransferasesHistonesLysineMethyltransferasesp300-CBP-Associated FactorTranscription Factors

Identifiers

PMID33793815
PMCPMC8226292
OpenAlexW3123474156

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.