Evidence map›Paper›PMID 33825708›Full record

ArticleActa crystallographica. Section D, Structural biology2021

Guest-protein incorporation into solvent channels of a protein host crystal (hostal).

Janina Sprenger, Jannette Carey, Alexander Schulz, Fleur Drouard, Catherine L Lawson, Claes von Wachenfeldt, Sara Linse, Leila Lo Leggio

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Janina SprengerDepartment of Chemistry, University of Copenhagen, DK-2100 Copenhagen, Denmark.
Jannette CareyChemistry Department, Princeton University, Princeton, NJ 08544, USA.
Alexander SchulzDepartment of Plant and Environmental Sciences, University of Copenhagen, DK-1871 Frederiksberg, Denmark.
Fleur DrouardDepartment of Chemistry, University of Copenhagen, DK-2100 Copenhagen, Denmark.
Catherine L LawsonInstitute for Quantitative Biomedicine, Rutgers University, Piscataway, NJ 08854, USA.
Claes von WachenfeldtDepartment of Biology, Lund University, SE-221 00 Lund, Sweden.ORCID 0000-0001-8950-3218
Sara LinseCenter for Molecular Protein Science, Lund University, SE-221 00 Lund, Sweden.
Leila Lo LeggioDepartment of Chemistry, University of Copenhagen, DK-2100 Copenhagen, Denmark.ORCID 0000-0002-5135-0882

Funding

Interreg LU001Interreg UCPH-002National Science Foundation DBI-1659726Vetenskapsrådet 2015-00143Villum Fonden 17535
6 · The paper itself

Abstract

Soaking small molecules into the solvent channels of protein crystals is the most common method of obtaining crystalline complexes with ligands such as substrates or inhibitors. The solvent channels of some protein crystals are large enough to allow the incorporation of macromolecules, but soaking of protein guests into protein crystals has not been reported. Such protein host crystals (here given the name hostals) incorporating guest proteins may be useful for a wide range of applications in biotechnology, for example as cargo systems or for diffraction studies analogous to the crystal sponge method. The present study takes advantage of crystals of the Escherichia coli tryptophan repressor protein (ds-TrpR) that are extensively domain-swapped and suitable for incorporating guest proteins by diffusion, as they are robust and have large solvent channels. Confocal fluorescence microscopy is used to follow the migration of cytochrome c and fluorophore-labeled calmodulin into the solvent channels of ds-TrpR crystals. The guest proteins become uniformly distributed in the crystal within weeks and enriched within the solvent channels. X-ray diffraction studies on host crystals with high concentrations of incorporated guests demonstrate that diffraction limits of ∼2.5 Å can still be achieved. Weak electron density is observed in the solvent channels, but the guest-protein structures could not be determined by conventional crystallographic methods. Additional approaches that increase the ordering of guests in the host crystal are discussed that may support protein structure determination using the hostal system in the future. This host system may also be useful for biotechnological applications where crystallographic order of the guest is not required.

Indexed as

LigandsModels, MolecularCrystallography, X-RayMolecular StructureProteinsSolventsX-Ray DiffractionLigandsProteinsSolventsdiffusionencapsulationhostalshost–guest systemmesoporesMOLEonlineprotein volume fractionsolvent channels

Identifiers

PMID33825708
PMCPMC8025882

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.