Evidence map›Paper›PMID 33837218›Full record

ArticleNature communications2021

Single-cell RNA sequencing reveals the mesangial identity and species diversity of glomerular cell transcriptomes.

Bing He, Ping Chen, Sonia Zambrano, Dina Dabaghie, Yizhou Hu, Katja Möller-Hackbarth, David Unnersjö-Jess, Gül Gizem Korkut, Emmanuelle Charrin, Marie Jeansson and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 114 citations in OpenAlex.

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  15. Pericytes in tissue fibrosis.American journal of physiology. Cell physiology · 2025
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10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 2 countries.

Bing He *Karolinska Institute/AstraZeneca Integrated Cardio Metabolic Center (ICMC), Huddinge, Sweden.ORCID 0000-0003-3877-4872
Ping Chen *Karolinska Institute/AstraZeneca Integrated Cardio Metabolic Center (ICMC), Huddinge, Sweden.ORCID 0000-0002-8068-1891
Sonia ZambranoKarolinska Institute/AstraZeneca Integrated Cardio Metabolic Center (ICMC), Huddinge, Sweden.ORCID 0000-0002-2613-9065
Dina DabaghieKarolinska Institute/AstraZeneca Integrated Cardio Metabolic Center (ICMC), Huddinge, Sweden.
Yizhou HuDivision of Neuroscience, Department of Medical Biochemistry and Biophysics (MBB), Karolinska Institute, Stockholm, Sweden.ORCID 0000-0002-2635-0258
Katja Möller-HackbarthKarolinska Institute/AstraZeneca Integrated Cardio Metabolic Center (ICMC), Huddinge, Sweden.
David Unnersjö-JessDepartment II of Internal Medicine and Center for Molecular Medicine Cologne (CMMC), University of Cologne, Cologne, Germany.ORCID 0000-0002-4162-0973
Gül Gizem KorkutKarolinska Institute/AstraZeneca Integrated Cardio Metabolic Center (ICMC), Huddinge, Sweden.
Emmanuelle CharrinKarolinska Institute/AstraZeneca Integrated Cardio Metabolic Center (ICMC), Huddinge, Sweden.
Marie JeanssonKarolinska Institute/AstraZeneca Integrated Cardio Metabolic Center (ICMC), Huddinge, Sweden.ORCID 0000-0003-1075-8563
Maria Bintanel-MorcilloKarolinska Institute/AstraZeneca Integrated Cardio Metabolic Center (ICMC), Huddinge, Sweden.
Anna WitaspDivision of Renal Medicine, Department of Clinical Sciences, Intervention and Technology, Karolinska Institute, Stockholm, Sweden.
Lars WennbergDivision of Transplantation, Department of Clinical Sciences, Intervention and Technology, Karolinska Institute, Stockholm, Sweden.
Annika WernersonDivision of Renal Medicine, Department of Clinical Sciences, Intervention and Technology, Karolinska Institute, Stockholm, Sweden.
Bernhard SchermerDepartment II of Internal Medicine and Center for Molecular Medicine Cologne (CMMC), University of Cologne, Cologne, Germany.
Thomas BenzingDepartment II of Internal Medicine and Center for Molecular Medicine Cologne (CMMC), University of Cologne, Cologne, Germany.ORCID 0000-0003-0512-1066
Patrik ErnforsDivision of Neuroscience, Department of Medical Biochemistry and Biophysics (MBB), Karolinska Institute, Stockholm, Sweden.ORCID 0000-0002-1140-3986
Christer BetsholtzKarolinska Institute/AstraZeneca Integrated Cardio Metabolic Center (ICMC), Huddinge, Sweden.ORCID 0000-0002-8494-971X
Mark LalBioscience, Cardiovascular, Renal and Metabolism, R&D Biopharmaceuticals, AstraZeneca, Gothenburg, Sweden.ORCID 0000-0002-2885-3633
Rickard SandbergDepartment of Cell and Molecular Biology, Karolinska Institute, Stockholm, Sweden.ORCID 0000-0001-6473-1740
Jaakko PatrakkaKarolinska Institute/AstraZeneca Integrated Cardio Metabolic Center (ICMC), Huddinge, Sweden. Jaakko.patrakka@ki.se.ORCID 0000-0001-9940-8433
Karolinska Institutet · SEKarolinska University Hospital · SEUniversity of Cologne · DEAstraZeneca (Sweden) · SEUppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular characterization of the individual cell types in human kidney as well as model organisms are critical in defining organ function and understanding translational aspects of biomedical research. Previous studies have uncovered gene expression profiles of several kidney glomerular cell types, however, important cells, including mesangial (MCs) and glomerular parietal epithelial cells (PECs), are missing or incompletely described, and a systematic comparison between mouse and human kidney is lacking. To this end, we use Smart-seq2 to profile 4332 individual glomerulus-associated cells isolated from human living donor renal biopsies and mouse kidney. The analysis reveals genetic programs for all four glomerular cell types (podocytes, glomerular endothelial cells, MCs and PECs) as well as rare glomerulus-associated macula densa cells. Importantly, we detect heterogeneity in glomerulus-associated Pdgfrb-expressing cells, including bona fide intraglomerular MCs with the functionally active phagocytic molecular machinery, as well as a unique mural cell type located in the central stalk region of the glomerulus tuft. Furthermore, we observe remarkable species differences in the individual gene expression profiles of defined glomerular cell types that highlight translational challenges in the field and provide a guide to design translational studies.

Indexed as

AnimalsCell SeparationComputational BiologyEndothelial CellsFlow CytometryGenetic HeterogeneityGlomerular MesangiumHumansMaleMicePodocytesProtein BiosynthesisReceptor, Platelet-Derived Growth Factor betaReceptors, Phospholipase A2RNA-SeqSingle-Cell AnalysisPLA2R1 protein, humanReceptor, Platelet-Derived Growth Factor betaReceptors, Phospholipase A2

Identifiers

PMID33837218
PMCPMC8035407
OpenAlexW3142061505

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.