ArticleGenome biology2021
Improving the completeness of public metadata accompanying omics studies.
Article in Genome biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
21 citing papers in PubMed.
- AOP-Based Analysis of Curated Transcriptomic Data Reveals a Context-Dependent Core Mechanism of PFAS-Induced Liver Steatosis.Environmental science & technology · 2026Article
- Genomic solutions to metadata challenges: a case study on the 1000 Bull Genomes Project.Genetics, selection, evolution : GSE · 2026Article
- The Paipu framework enables creation of a large-scale mammalian cancer transcriptomics atlas.bioRxiv : the preprint server for biology · 2026Article
- Metappuccino: large language model-driven reconstruction of sequence read archive metadata for cancer research.Bioinformatics (Oxford, England) · 2026Article
- Making genomic data FAIR through effective Data Portals.Scientific data · 2025Article
- The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus data repository.Genome biology · 2025Article
- Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies.Cell genomics · 2025Review
- Review
- (Pan)genomic analysis of twoMicrobiology spectrum · 2024Article
- Amplicon Sequencing Minimal Information (ASqMI): Quality and Reporting Guidelines for Actionable Calls in Biodefense Applications.Journal of AOAC International · 2023Article
- Metadata integrity in bioinformatics: Bridging the gap between data and knowledge.Computational and structural biotechnology journal · 2023Review
- Metadata retrieval from sequence databases with ffq.Bioinformatics (Oxford, England) · 2023Article
- The DataHarmonizer: a tool for faster data harmonization, validation, aggregation and analysis of pathogen genomics contextual information.Microbial genomics · 2023Article
- Systematic tissue annotations of genomics samples by modeling unstructured metadata.Nature communications · 2022Article
- Article
- Recent developments and future directions in meta-analysis of differential gene expression in livestock RNA-Seq.Frontiers in genetics · 2022Review
- The ATCC Genome Portal: Microbial Genome Reference Standards with Data Provenance.Microbiology resource announcements · 2021Article
- Open science, data sharing and solidarity: who benefits?History and philosophy of the life sciences · 2021Article
- The role of metadata in reproducible computational research.Patterns (New York, N.Y.) · 2021Review
- Current Approaches for Advancement in Understanding the Molecular Mechanisms of Mycotoxin Biosynthesis.International journal of molecular sciences · 2021Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
PubMed holds no abstract for this paper.
Indexed as
Identifiers
What Socratic holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.