ArticleThe plant genome2021
Genome-wide association analysis for response of Senegalese sorghum accessions to Texas isolates of anthracnose.
Article in The plant genome, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
16 citing papers in PubMed, 22 citations in OpenAlex.
- Decoupling the chemical and physical origins of the seed spectral manifold in sorghum.NPJ systems biology and applications · 2026Article
- A machine learning approach to genome-wide association mapping of disease resistance and geographic origin in sorghum.BMC plant biology · 2026Article
- Candidate genes for anthracnose resistance in Senegalese sorghum: a machine learning-based exploration.Functional & integrative genomics · 2025Article
- MINE: maximally informative next experiment-toward a new GWAS experimental design and methodology.G3 (Bethesda, Md.) · 2025Article
- Unveiling the Potential Role of Dhurrin in Sorghum During Infection by the Head Smut PathogenPlants (Basel, Switzerland) · 2025Article
- Review
- Genome-Wide Association Analysis Uncovers Genes Associated with Resistance to Head Smut Pathotype 5 in Senegalese Sorghum Accessions.Plants (Basel, Switzerland) · 2024Article
- A Genome-Wide Association Study of Nigerien and Senegalese Sorghum Germplasm ofPlants (Basel, Switzerland) · 2023Article
- Genome-Wide Association Study of Seed Morphology Traits in Senegalese Sorghum Cultivars.Plants (Basel, Switzerland) · 2023Article
- Multi-Trait Genome-Wide Association Studies ofPathogens (Basel, Switzerland) · 2023Article
- Inoculation and Screening Methods for Major Sorghum Diseases Caused by Fungal Pathogens:Plants (Basel, Switzerland) · 2023Review
- A Genome-Wide Association Study of Senegalese Sorghum Seedlings Responding to Pathotype 5 ofPlants (Basel, Switzerland) · 2022Article
- Transcriptome analysis provides insights into the bases of salicylic acid-induced resistance to anthracnose in sorghum.Plant molecular biology · 2022Article
- Genome-wide association study of Senegalese sorghum seedlings responding to a Texas isolate of Colletotrichum sublineola.Scientific reports · 2022Article
- Two decades of association mapping: Insights on disease resistance in major crops.Frontiers in plant science · 2022Review
- Genome-wide association analysis for response of Senegalese sorghum accessions to Texas isolates of anthracnose.The plant genome · 2021Article
Corrections and comments
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Authors and funding
5 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Anthracnose disease of sorghum is caused by Colletotrichum sublineola, a filamentous fungus. The genetic basis of resistance to anthracnose in sorghum is largely unclear, especially in Senegalese sorghum germplasm. In this study, 163 Senegalese sorghum accessions were evaluated for response to C. sublineola, and a genome-wide association study (GWAS) was performed to identify genetic variation associated with response to C. sublineola using 193,727 single nucleotide polymorphisms (SNPs) throughout the genome. Germplasm diversity analysis showed low genetic diversity and slow linkage disequilibrium (LD) decay among the Senegalese accessions. Phenotypic analysis resulted in relatively low differences to C. sublineola among the tested population. Genome-wide association study did not identify any significant association based on a strict threshold for the number of SNPs available. However, individual analysis of the top eight SNPs associated with relative susceptibility and resistance identified candidate genes that have been shown to play important roles in plant stress tolerance in previous studies. This study identifies sorghum genes whose annotated properties have known roles in host defense and thus identify them as candidates for use in breeding for resistance to anthracnose.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.