Evidence map›Paper›PMID 33909446›Full record

ArticleMolecular biology of the cell2021

Spatial proximity of proteins surrounding zyxin under force-bearing conditions.

Joleen S Cheah, Kyle A Jacobs, Tzu Wei Lai, Reca Caballelo, Jacqueline L Yee, Shuji Ueda, Volkmar Heinrich, Soichiro Yamada

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Defined extracellular matrix compositions support stiffness-insensitive cell spreading and adhesion signaling.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Effects of forces on chromatin.APL bioengineering · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Joleen S CheahBiomedical Engineering Department, University of California Davis, Davis, CA 95616.
Kyle A JacobsBiomedical Engineering Department, University of California Davis, Davis, CA 95616.
Tzu Wei LaiBiomedical Engineering Department, University of California Davis, Davis, CA 95616.
Reca CaballeloBiomedical Engineering Department, University of California Davis, Davis, CA 95616.
Jacqueline L YeeBiomedical Engineering Department, University of California Davis, Davis, CA 95616.
Shuji UedaGraduate School of Agricultural Science, Kobe University, Kobe, Japan 657.
Volkmar HeinrichBiomedical Engineering Department, University of California Davis, Davis, CA 95616.
Soichiro YamadaBiomedical Engineering Department, University of California Davis, Davis, CA 95616.
University of California, Davis · USKobe University · JP

Funding

Identification of stretch-induced biotinylation at cadherin junctionsR03EB021636 · NIBIB · UNIVERSITY OF CALIFORNIA AT DAVIS · PI YAMADA, SOICHIRO · 2016 to 2017
$141k
NIBIB NIH HHS R03 EB021636
6 · The paper itself

Abstract

Sensing physical forces is a critical first step in mechano-transduction of cells. Zyxin, a LIM domain-containing protein, is recruited to force-bearing actin filaments and is thought to repair and strengthen them. Yet, the precise force-induced protein interactions surrounding zyxin remain unclear. Using BioID analysis, we identified proximal proteins surrounding zyxin under normal and force-bearing conditions by label-free mass spectrometry analysis. Under force-bearing conditions, increased biotinylation of α-actinin 1, α-actinin 4, and AFAP1 were detected, and these proteins accumulated along force-bearing actin fibers independently from zyxin, albeit at a lower intensity than zyxin. VASP also accumulated along force-bearing actin fibers in a zyxin-dependent manner, but the biotinylation of VASP remained constant regardless of force, supporting the model of a free zyxin-VASP complex in the cytoplasm being corecruited to tensed actin fibers. In addition, ARHGAP42, a RhoA GAP, was also identified as a proximal protein of zyxin and colocalized with zyxin along contractile actin bundles. The overexpression of ARHGAP42 reduced the rate of small wound closure, a zyxin-dependent process. These results demonstrate that the application of proximal biotinylation can resolve the proximity and composition of protein complexes as a function of force, which had not been possible with traditional biochemical analysis.

Indexed as

Actin CytoskeletonActinsAnimalsBiomechanical PhenomenaCell Adhesion MoleculesDogsFocal AdhesionsMadin Darby Canine Kidney CellsMechanical PhenomenaMicrofilament ProteinsPhosphoproteinsStress, MechanicalZyxinActinsCell Adhesion MoleculesMicrofilament ProteinsPhosphoproteinsZyxin

Identifiers

PMID33909446
PMCPMC8351546
OpenAlexW3159951393

What Socratic holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.