Evidence map›Paper›PMID 33909924›Full record

ArticleThe EMBO journal2021

Cooperation between HDAC3 and DAX1 mediates lineage restriction of embryonic stem cells.

Daniel Olivieri, Eleonora Castelli, Yumiko K Kawamura, Panagiotis Papasaikas, Ilya Lukonin, Melanie Rittirsch, Daniel Hess, Sébastien A Smallwood, Michael B Stadler, Antoine H F M Peters and 1 more

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Daniel OlivieriFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.ORCID 0000-0002-2140-7200
Eleonora CastelliFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Yumiko K KawamuraFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Panagiotis PapasaikasFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Ilya LukoninFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Melanie RittirschFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Daniel HessFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Sébastien A SmallwoodFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Michael B StadlerFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Antoine H F M PetersFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.ORCID 0000-0002-0311-1887
Joerg BetschingerFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.ORCID 0000-0002-2627-8479
Friedrich Miescher Institute · CHSIB Swiss Institute of Bioinformatics · CHUniversity of Basel · CH

Funding

Wellcome Trust
6 · The paper itself

Abstract

Mouse embryonic stem cells (mESCs) are biased toward producing embryonic rather than extraembryonic endoderm fates. Here, we identify the mechanism of this barrier and report that the histone deacetylase Hdac3 and the transcriptional corepressor Dax1 cooperatively limit the lineage repertoire of mESCs by silencing an enhancer of the extraembryonic endoderm-specifying transcription factor Gata6. This restriction is opposed by the pluripotency transcription factors Nr5a2 and Esrrb, which promote cell type conversion. Perturbation of the barrier extends mESC potency and allows formation of 3D spheroids that mimic the spatial segregation of embryonic epiblast and extraembryonic endoderm in early embryos. Overall, this study shows that transcriptional repressors stabilize pluripotency by biasing the equilibrium between embryonic and extraembryonic lineages that is hardwired into the mESC transcriptional network.

Indexed as

DAX-1 Orphan Nuclear ReceptorHistone DeacetylasesAnimalsCell DifferentiationCells, CulturedFemaleGATA6 Transcription FactorHistone Deacetylase 3MaleMiceMouse Embryonic Stem CellsReceptors, Cytoplasmic and NuclearReceptors, EstrogenRNA, Small InterferingDAX-1 Orphan Nuclear ReceptorEsrrb protein, mouseGata6 protein, mouseGATA6 Transcription FactorHistone Deacetylase 3Histone DeacetylasesNr0b1 protein, mouseNr5a2 protein, mouseReceptors, Cytoplasmic and NuclearReceptors, EstrogenRNA, Small InterferingDax1/Nr0b1embryonic stem cellextraembryonic endodermHdac3pluripotency

Identifiers

PMID33909924
PMCPMC8204867
OpenAlexW3159261820

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.