Evidence map›Paper›PMID 33956596›Full record

ArticleMicrobial genomics2021

Analysis of putative quadruplex-forming sequences in fungal genomes: novel antifungal targets?

Emily F Warner, Natália Bohálová, Václav Brázda, Zoë A E Waller, Stefan Bidula

Open access · goldAbstract read
In one paragraph

Article in Microbial genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

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  8. The Newly Sequenced Genome ofInternational journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 2 countries.

Emily F WarnerSchool of Clinical Medicine, University of Cambridge, Cambridge, UK.
Natália BohálováInstitute of Biophysics of the Czech Academy of Sciences, Brno, Czechia.
Václav BrázdaInstitute of Biophysics of the Czech Academy of Sciences, Brno, Czechia.
Zoë A E WallerSchool of Pharmacy, University College London, London, UK.
Stefan BidulaSchool of Biological Sciences, University of East Anglia, Norwich, UK.
Czech Academy of Sciences, Institute of Biophysics · CZMasaryk University · CZUniversity College London · GBUniversity of Cambridge · GBUniversity of East Anglia · GB

Funding

Biotechnology and Biological Sciences Research Council BB/L02229X/1Wellcome TrustWellcome Trust 204515/Z/16/Z
6 · The paper itself

Abstract

Fungal infections cause >1 million deaths annually and the emergence of antifungal resistance has prompted the exploration for novel antifungal targets. Quadruplexes are four-stranded nucleic acid secondary structures, which can regulate processes such as transcription, translation, replication and recombination. They are also found in genes linked to virulence in microbes, and ligands that bind to quadruplexes can eliminate drug-resistant pathogens. Using a computational approach, we quantified putative quadruplex-forming sequences (PQS) in 1359 genomes across the fungal kingdom and explored their presence in genes related to virulence, drug resistance and biological processes associated with pathogenicity in

Indexed as

AlgorithmsAntifungal AgentsAscomycotaAspergillusAspergillus fumigatusDrug Resistance, FungalGenome, FungalGenome, ViralTranscriptomeVirulenceAntifungal AgentsAspergillus fumigatusdrug resistanceFungiG-quadruplexesi-motifsin-silicovirulence

Identifiers

PMID33956596
PMCPMC8209732
OpenAlexW3157311989

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.