Evidence map›Paper›PMID 33958448›Full record

ArticleScience (New York, N.Y.)2021

Environmental robustness of the global yeast genetic interaction network.

Michael Costanzo, Jing Hou, Vincent Messier, Justin Nelson, Mahfuzur Rahman, Benjamin VanderSluis, Wen Wang, Carles Pons, Catherine Ross, Matej Ušaj and 7 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

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  7. Simple biological controllers drive the evolution of soft modes.Proceedings of the National Academy of Sciences of the United States of America · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Michael Costanzo *The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON M5S 3E1, Canada.ORCID https://orcid.org/0000-0002-7906-2604
Jing Hou *The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON M5S 3E1, Canada.ORCID https://orcid.org/0000-0003-2940-9670
Vincent Messier *The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON M5S 3E1, Canada.ORCID https://orcid.org/0000-0003-0476-5425
Justin Nelson *Department of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA.ORCID https://orcid.org/0000-0001-5488-5850
Mahfuzur Rahman *Department of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA.ORCID https://orcid.org/0000-0002-9226-3988
Benjamin VanderSluisDepartment of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA.ORCID https://orcid.org/0000-0002-0299-5617
Wen WangDepartment of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA.ORCID https://orcid.org/0000-0002-5812-6744
Carles PonsInstitute for Research in Biomedicine (IRB Barcelona), Barcelona Institute for Science and Technology, Barcelona, Spain.ORCID https://orcid.org/0000-0002-9131-9089
Catherine RossThe Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON M5S 3E1, Canada.
Matej UšajThe Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON M5S 3E1, Canada.ORCID https://orcid.org/0000-0003-0675-2847
Bryan-Joseph San LuisThe Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON M5S 3E1, Canada.
Emira ShuteriqiThe Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON M5S 3E1, Canada.
Elizabeth N KochDepartment of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA.
Patrick AloyInstitute for Research in Biomedicine (IRB Barcelona), Barcelona Institute for Science and Technology, Barcelona, Spain.ORCID https://orcid.org/0000-0002-3557-0236
Chad L MyersDepartment of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA. chadm@umn.edu charlie.boone@utoronto.ca brenda.andrews@utoronto.ca.ORCID https://orcid.org/0000-0002-1026-5972
Charles BooneThe Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON M5S 3E1, Canada. chadm@umn.edu charlie.boone@utoronto.ca brenda.andrews@utoronto.ca.ORCID https://orcid.org/0000-0002-3542-6760
Brenda AndrewsThe Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON M5S 3E1, Canada. chadm@umn.edu charlie.boone@utoronto.ca brenda.andrews@utoronto.ca.ORCID https://orcid.org/0000-0001-6427-6493

Funding

Mapping the reference genetic network of a eukaryotic cellR01HG005853 · NHGRI · UNIVERSITY OF TORONTO · PI ANDREWS, BRENDA JEAN, BOONE, CHARLES · 2010 to 2025
$7.6M
Methods for large-scale analysis of chemical-genetic interactionsR01HG005084 · NHGRI · UNIVERSITY OF MINNESOTA · PI MYERS, CHAD L · 2010 to 2022
$2.9M
NHGRI NIH HHS R01 HG005084NHGRI NIH HHS R01 HG005853
6 · The paper itself

Abstract

Phenotypes associated with genetic variants can be altered by interactions with other genetic variants (GxG), with the environment (GxE), or both (GxGxE). Yeast genetic interactions have been mapped on a global scale, but the environmental influence on the plasticity of genetic networks has not been examined systematically. To assess environmental rewiring of genetic networks, we examined 14 diverse conditions and scored 30,000 functionally representative yeast gene pairs for dynamic, differential interactions. Different conditions revealed novel differential interactions, which often uncovered functional connections between distantly related gene pairs. However, the majority of observed genetic interactions remained unchanged in different conditions, suggesting that the global yeast genetic interaction network is robust to environmental perturbation and captures the fundamental functional architecture of a eukaryotic cell.

Indexed as

Gene-Environment InteractionGene Regulatory NetworksAllelesGenetic FitnessMutationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID33958448
PMCPMC9132594

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.