Evidence map›Paper›PMID 33971636›Full record

ReviewPhysical biology2021

Emerging machine learning approaches to phenotyping cellular motility and morphodynamics.

Hee June Choi, Chuangqi Wang, Xiang Pan, Junbong Jang, Mengzhi Cao, Joseph A Brazzo, Yongho Bae, Kwonmoo Lee

Abstract readReview
In one paragraph

Review in Physical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Interpretable Fine-Grained Phenotypes of Subcellular Dynamics via Unsupervised Deep Learning.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  7. Article
  8. Article
  9. Opportunities and Challenges in Applying AI to Evolutionary Morphology.Integrative organismal biology (Oxford, England) · 2024
    Review
  10. Methods and computational tools to study eukaryotic cell migrationFrontiers in cell and developmental biology · 2024
    Review
  11. Methods and Measures for Investigating Microscale Motility.Integrative and comparative biology · 2023
    Review
  12. Article
  13. Unsupervised Contour Tracking of Live Cells by Mechanical and Cycle Consistency Losses.Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition · 2023
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hee June ChoiDepartment of Biomedical Engineering, Worcester Polytechnic Institute, Worcester, MA 01609, United States of America.
Chuangqi WangDepartment of Biomedical Engineering, Worcester Polytechnic Institute, Worcester, MA 01609, United States of America.
Xiang PanDepartment of Biomedical Engineering, Worcester Polytechnic Institute, Worcester, MA 01609, United States of America.ORCID 0000-0002-7521-0702
Junbong JangDepartment of Biomedical Engineering, Worcester Polytechnic Institute, Worcester, MA 01609, United States of America.ORCID 0000-0001-9317-6520
Mengzhi CaoData Science Program, Worcester Polytechnic Institute, Worcester, MA 01609, United States of America.
Joseph A BrazzoDepartment of Pathology and Anatomical Sciences, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, State University of New York, Buffalo, NY 14203, United States of America.
Yongho BaeDepartment of Pathology and Anatomical Sciences, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, State University of New York, Buffalo, NY 14203, United States of America.ORCID 0000-0002-1838-1652
Kwonmoo LeeDepartment of Biomedical Engineering, Worcester Polytechnic Institute, Worcester, MA 01609, United States of America.ORCID 0000-0001-6838-7094

Funding

Unraveling subcellular heterogeneity of molecular coordination by machine learningR35GM133725 · NIGMS · WORCESTER POLYTECHNIC INSTITUTE · PI Kwonmoo Lee · 2019 to 2026
$3.9M
NIGMS NIH HHS R35 GM133725
6 · The paper itself

Abstract

Cells respond heterogeneously to molecular and environmental perturbations. Phenotypic heterogeneity, wherein multiple phenotypes coexist in the same conditions, presents challenges when interpreting the observed heterogeneity. Advances in live cell microscopy allow researchers to acquire an unprecedented amount of live cell image data at high spatiotemporal resolutions. Phenotyping cellular dynamics, however, is a nontrivial task and requires machine learning (ML) approaches to discern phenotypic heterogeneity from live cell images. In recent years, ML has proven instrumental in biomedical research, allowing scientists to implement sophisticated computation in which computers learn and effectively perform specific analyses with minimal human instruction or intervention. In this review, we discuss how ML has been recently employed in the study of cell motility and morphodynamics to identify phenotypes from computer vision analysis. We focus on new approaches to extract and learn meaningful spatiotemporal features from complex live cell images for cellular and subcellular phenotyping.

Indexed as

Cell MovementMachine LearningPhenotypePhysiologycell morphodynamicscell motilitydeep learninglive cell imagingmachine learningphenotyping

Identifiers

PMID33971636
PMCPMC9131244

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.